Evidence map›Paper›PMID 26352829›Full record

ArticlePloS one2015

Transcriptional Analysis of the Conjugal Transfer Genes of Rickettsia bellii RML 369-C.

Chan C Heu, Timothy J Kurtti, Curtis M Nelson, Ulrike G Munderloh

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Examination of Rickettsial Host Range for Shuttle Vectors Based onApplied and environmental microbiology · 2022
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Chan C HeuDepartment of Entomology, University of Minnesota, 219 Hodson Hall, 1980 Folwell Ave, St. Paul, Minnesota, United States of America.
Timothy J KurttiDepartment of Entomology, University of Minnesota, 219 Hodson Hall, 1980 Folwell Ave, St. Paul, Minnesota, United States of America.
Curtis M NelsonDepartment of Entomology, University of Minnesota, 219 Hodson Hall, 1980 Folwell Ave, St. Paul, Minnesota, United States of America.
Ulrike G MunderlohDepartment of Entomology, University of Minnesota, 219 Hodson Hall, 1980 Folwell Ave, St. Paul, Minnesota, United States of America.
University of Minnesota · US

Funding

Development of Paratransgenic Ticks for Disease ControlR01AI049424 · NIAID · UNIVERSITY OF MINNESOTA TWIN CITIES · PI MUNDERLOH, ULRIKE GERTRUD · 2002 to 2022
$6.9M
The Role of Plasmids in Rickettsia BiologyR01AI081690 · NIAID · UNIVERSITY OF MINNESOTA · PI MUNDERLOH, ULRIKE GERTRUD · 2010 to 2014
$1.8M
NIAID NIH HHS 5R01AI081690NIAID NIH HHS R01 AI049424NIAID NIH HHS R01 AI081690
6 · The paper itself

Abstract

Rickettsia bellii is an obligate intracellular bacterium that is one of the few rickettsiae that encode a complete set of conjugative transfer (tra) genes involved in bacterial conjugation and has been shown to exhibit pili-like structures. The reductive genomes of rickettsiae beg the question whether the tra genes are nonfunctional or functioning to enhance the genetic plasticity and biology of rickettsiae. We characterized the transcriptional dynamics of R. bellii tra genes in comparison to genes transcribed stably and above the background level to understand when and at what levels the tra genes are active or whether the tra genes are degenerative. We determined that the best reference genes, out of 10 tested, were methionyl tRNA ligase (metG) or a combination of metG and ribonucleoside diphosphate reductase 2 subunit beta (nrdF), using statistical algorithms from two different programs: Normfinder and BestKeeper. To validate the use of metG with other rickettsial genes exhibiting variable transcriptional patterns we examined its use with sca2 and rickA, genes involved in actin based motility. Both were shown to be up-regulated at different times of replication in Vero cells, showing variable and stable transcription levels of rickA and sca2, respectively. traATi was up-regulated at 72 hours post inoculation in the tick cell line ISE6, but showed no apparent changes in the monkey cell line Vero and mouse cell line L929. The transcription of tra genes was positively correlated with one another and up-regulated from 12 to 72 hours post inoculation (HPI) when compared to RBE_0422 (an inactivated transposase-derivative found within the tra cluster). Thus, the up-regulation of the tra genes indicated that the integrity and activity of each gene were intact and may facilitate the search for the optimal conditions necessary to demonstrate conjugation in rickettsiae.

Indexed as

Transcription, GeneticActinsAnimalsAtaxin-2Bacterial ProteinsChlorocebus aethiopsConjugation, GeneticFimbriae ProteinsGene Expression Regulation, BacterialMicePhylogenyRibonucleotide ReductasesRickettsiaRNA Ligase (ATP)Vero CellsActinsAtaxin-2Bacterial ProteinsFimbriae ProteinsNrdF protein, bacteriaRibonucleotide ReductasesRickA protein, RickettsiaRNA Ligase (ATP)

Identifiers

PMID26352829
PMCPMC4564193
OpenAlexW1640166604

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.