Evidence map›Paper›PMID 26352142›Full record

ArticlePloS one2015

Comparative Gene Expression Analyses Identify Luminal and Basal Subtypes of Canine Invasive Urothelial Carcinoma That Mimic Patterns in Human Invasive Bladder Cancer.

Deepika Dhawan, Melissa Paoloni, Shweta Shukradas, Dipanwita Roy Choudhury, Bruce A Craig, José A Ramos-Vara, Noah Hahn, Patty L Bonney, Chand Khanna, Deborah W Knapp

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed, 1 pooled it
7.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 1 synthesis or guideline pooled it, 103 citations in OpenAlex.

  1. A Comparative Meta-Analysis andFrontiers in veterinary science · 2020
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  9. Anti-cancer activity of Chaga mushroom (Frontiers in pharmacology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Deepika DhawanDepartment of Veterinary Clinical Sciences, Purdue University College of Veterinary Medicine, Purdue University, West Lafayette, Indiana, United States of America; Purdue Oncological Sciences Center, Purdue University, West Lafayette, Indiana, United States of America.
Melissa PaoloniCCR Comparative Oncology Program, Center for Cancer Research, National Cancer Institute, Bethesda, Maryland, United States of America.
Shweta ShukradasDepartment of Bioinformatics, Strand Genomics Inc, San Francisco, California, United States of America.
Dipanwita Roy ChoudhuryDepartment of Bioinformatics, Strand Genomics Inc, San Francisco, California, United States of America.
Bruce A CraigDepartment of Statistics, Purdue University, West Lafayette, Indiana, United States of America.
José A Ramos-VaraPurdue Oncological Sciences Center, Purdue University, West Lafayette, Indiana, United States of America; Department of Comparative Pathobiology, Purdue University College of Veterinary Medicine, Purdue University, West Lafayette, Indiana, United States of America.
Noah HahnDepartment of Oncology and Urology, Johns Hopkins University School of Medicine, Baltimore, Maryland, United States of America.
Patty L BonneyDepartment of Veterinary Clinical Sciences, Purdue University College of Veterinary Medicine, Purdue University, West Lafayette, Indiana, United States of America.
Chand KhannaCCR Comparative Oncology Program, Center for Cancer Research, National Cancer Institute, Bethesda, Maryland, United States of America.
Deborah W KnappDepartment of Veterinary Clinical Sciences, Purdue University College of Veterinary Medicine, Purdue University, West Lafayette, Indiana, United States of America; Purdue Oncological Sciences Center, Purdue University, West Lafayette, Indiana, United States of America; Purdue University Center for Cancer Research, Purdue University, West Lafayette, Indiana, United States of America.
Purdue University West Lafayette · USCenter for Cancer Research · USJohns Hopkins Medicine · US

Funding

Quality Assurance and Quality Control Project Management: Improving Submissions and Study Conduct in the Human Subjects Research Prior Approval ProcessUL1TR002529 · NCATS · INDIANA UNIVERSITY INDIANAPOLIS · PI MOE, SHARON M, WIEHE, SARAH ELIZABETH · 2018 to 2022
$27.2M
Indiana Clinical and Translational Sciences InstituteUL1TR001108 · NCATS · INDIANA UNIVERSITY INDIANAPOLIS · PI DENNE, SCOTT C., SHEKHAR, ANANTHA · 2013 to 2017
$23.3M
NCATS NIH HHS UL1 TR001108
6 · The paper itself

Abstract

More than 160,000 people are expected to die from invasive urothelial carcinoma (iUC) this year worldwide. Research in relevant animal models is essential to improving iUC management. Naturally-occurring canine iUC closely resembles human iUC in histopathology, metastatic behavior, and treatment response, and could provide a relevant model for human iUC. The molecular characterization of canine iUC, however, has been limited. Work was conducted to compare gene expression array results between tissue samples from iUC and normal bladder in dogs, with comparison to similar expression array data from human iUC and normal bladder in the literature. Considerable similarities between enrichment patterns of genes in canine and human iUC were observed. These included patterns mirroring basal and luminal subtypes initially observed in human breast cancer and more recently noted in human iUC. Canine iUC samples also exhibited enrichment for genes involved in P53 pathways, as has been reported in human iUC. This is particularly relevant as drugs targeting these genes/pathways in other cancers could be repurposed to treat iUC, with dogs providing a model to optimize therapy. As part of the validation of the results and proof of principal for evaluating individualized targeted therapy, the overexpression of EGFR in canine bladder iUC was confirmed. The similarities in gene expression patterns between dogs and humans add considerably to the value of naturally-occurring canine iUC as a relevant and much needed animal model for human iUC. Furthermore, the finding of expression patterns that cross different pathologically-defined cancers could allow studies of dogs with iUC to help optimize cancer management across multiple cancer types. The work is also expected to lead to a better understanding of the biological importance of the gene expression patterns, and the potential application of the cross-species comparisons approach to other cancer types as well.

Indexed as

Gene Expression Regulation, NeoplasticAnimalsCarcinoma, Transitional CellDisease Models, AnimalDogsFemaleGene ExpressionHumansMaleOligonucleotide Array Sequence AnalysisUrinary Bladder NeoplasmsUrothelium

Identifiers

PMID26352142
PMCPMC4564191
OpenAlexW1962592037

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.