Evidence map›Paper›PMID 26350962›Full record

ArticleNature communications2015

The interactions between a small molecule and G-quadruplexes are visualized by fluorescence lifetime imaging microscopy.

Arun Shivalingam, M Angeles Izquierdo, Alix Le Marois, Aurimas Vyšniauskas, Klaus Suhling, Marina K Kuimova, Ramon Vilar

Abstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed.

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  20. DHX36 maintains genomic integrity by unwinding G-quadruplexes.Genes to cells : devoted to molecular & cellular mechanisms · 2023
    Article

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Arun ShivalingamDepartment of Chemistry, Imperial College London, South Kensington, London SW7 2AZ, UK.
M Angeles IzquierdoDepartment of Chemistry, Imperial College London, South Kensington, London SW7 2AZ, UK.
Alix Le MaroisDepartment of Physics, King's College London, Strand, London WC2R 2LS, UK.
Aurimas VyšniauskasDepartment of Chemistry, Imperial College London, South Kensington, London SW7 2AZ, UK.
Klaus SuhlingDepartment of Physics, King's College London, Strand, London WC2R 2LS, UK.
Marina K KuimovaDepartment of Chemistry, Imperial College London, South Kensington, London SW7 2AZ, UK.
Ramon VilarDepartment of Chemistry, Imperial College London, South Kensington, London SW7 2AZ, UK.

Funding

Medical Research Council MR/K015664/1
6 · The paper itself

Abstract

Guanine-rich oligonucleotides can fold into quadruple-stranded helical structures known as G-quadruplexes. Mounting experimental evidence has gathered suggesting that these non-canonical nucleic acid structures form in vivo and play essential biological roles. However, to date, there are no small-molecule optical probes to image G-quadruplexes in live cells. Herein, we report the design and development of a small fluorescent molecule, which can be used as an optical probe for G-quadruplexes. We demonstrate that the fluorescence lifetime of this new probe changes considerably upon interaction with different nucleic acid topologies. Specifically, longer fluorescence lifetimes are observed in vitro for G-quadruplexes than for double- and single-stranded nucleic acids. Cellular studies confirm that this molecule is cell permeable, has low cytotoxicity and localizes primarily in the cell nucleus. Furthermore, using fluorescence lifetime imaging microscopy, live-cell imaging suggests that the probe can be used to study the interaction of small molecules with G-quadruplexes in vivo.

Indexed as

Fluorescent DyesG-QuadruplexesOligonucleotidesCell Line, TumorHumansIntravital MicroscopyIn Vitro TechniquesMicroscopy, ConfocalMicroscopy, FluorescenceNucleic Acid ConformationSpectrometry, FluorescenceFluorescent DyesOligonucleotides

Identifiers

PMID26350962
PMCPMC4579598

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.