Evidence map›Paper›PMID 26350329›Full record

ReviewMicrobiology spectrum2015

New Technologies for Studying Biofilms.

Michael J Franklin, Connie Chang, Tatsuya Akiyama, Brian Bothner

Abstract readReview
In one paragraph

Review in Microbiology spectrum, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Love at First Taste: Induction of Larval Settlement by Marine Microbes.International journal of molecular sciences · 2020
    Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Improved mini-TnApplied and environmental microbiology · 2023
    Article
  11. Review
  12. SpoT-mediated NapA upregulation promotes oxidative stress-inducedAntimicrobial agents and chemotherapy · 2023
    Article
  13. Defensins ofInternational journal of environmental research and public health · 2023
    Article
  14. Article
  15. Article
  16. Imaging biofilms using fluorescenceFrontiers in cellular and infection microbiology · 2023
    Review
  17. Article
  18. Transcriptome Analysis of the Response of MatureAntibiotics (Basel, Switzerland) · 2022
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Michael J FranklinCenter for Biofilm Engineering, Montana State University-Bozeman, Bozeman, MT 59717.
Connie ChangCenter for Biofilm Engineering, Montana State University-Bozeman, Bozeman, MT 59717.
Tatsuya AkiyamaCenter for Biofilm Engineering, Montana State University-Bozeman, Bozeman, MT 59717.
Brian BothnerCenter for Biofilm Engineering, Montana State University-Bozeman, Bozeman, MT 59717.

Funding

Resuscitation of P. aeruginosa biofilm cells from dormancyR01AI113330 · NIAID · MONTANA STATE UNIVERSITY - BOZEMAN · PI FRANKLIN, MICHAEL J. · 2014 to 2018
$1.6M
Genetic and physiological analyses of P. aeruginosa dormancy factorsR21AI140163 · NIAID · MONTANA STATE UNIVERSITY - BOZEMAN · PI FRANKLIN, MICHAEL J. · 2018 to 2019
$391k
NIAID NIH HHS AI113330NIAID NIH HHS R01 AI113330NIAID NIH HHS R21 AI140163
6 · The paper itself

Abstract

Bacteria have traditionally been studied as single-cell organisms. In laboratory settings, aerobic bacteria are usually cultured in aerated flasks, where the cells are considered essentially homogenous. However, in many natural environments, bacteria and other microorganisms grow in mixed communities, often associated with surfaces. Biofilms are comprised of surface-associated microorganisms, their extracellular matrix material, and environmental chemicals that have adsorbed to the bacteria or their matrix material. While this definition of a biofilm is fairly simple, biofilms are complex and dynamic. Our understanding of the activities of individual biofilm cells and whole biofilm systems has developed rapidly, due in part to advances in molecular, analytical, and imaging tools and the miniaturization of tools designed to characterize biofilms at the enzyme level, cellular level, and systems level.

Indexed as

BiofilmsMicrobiological TechniquesBacteriaBacterial Physiological PhenomenaBacterial ProteinsBacterial Proteins

Identifiers

PMID26350329
PMCPMC4821632

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.