Evidence map›Paper›PMID 26350217›Full record

ArticleNucleic acids research2015

Cooperation between SMYD3 and PC4 drives a distinct transcriptional program in cancer cells.

Jin-Man Kim, Kyunghwan Kim, Thomas Schmidt, Vasu Punj, Haley Tucker, Judd C Rice, Tobias S Ulmer, Woojin An

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 80 citations in OpenAlex.

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  15. Genome editing.Scientific reports · 2022
    Article
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  19. High-content CRISPR screening.Nature reviews. Methods primers · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Jin-Man KimDepartment of Biochemistry and Molecular Biology, University of Southern California, Norris Comprehensive Cancer Center, Los Angeles, CA 90033, USA.
Kyunghwan KimDepartment of Biochemistry and Molecular Biology, University of Southern California, Norris Comprehensive Cancer Center, Los Angeles, CA 90033, USA Department of Biology, College of Natural Sciences, Chungbuk National University, Cheongju, Chungbuk 361-763, Republic of Korea.
Thomas SchmidtDepartment of Biochemistry and Molecular Biology, Zilkha Neurogenetic Institute, Keck School of Medicine, University of Southern California, 1501 San Pablo Street, Los Angeles, CA 90033, USA.
Vasu PunjDepartment of Medicine, Norris Comprehensive Cancer Center, 1450 Biggy Street, Los Angeles, CA 90033, USA.
Haley TuckerUniversity of Texas at Austin, Institute for Cellular and Molecular Biology, Austin, TX 78712, USA.
Judd C RiceDepartment of Biochemistry and Molecular Biology, University of Southern California, Norris Comprehensive Cancer Center, Los Angeles, CA 90033, USA.
Tobias S UlmerDepartment of Biochemistry and Molecular Biology, Zilkha Neurogenetic Institute, Keck School of Medicine, University of Southern California, 1501 San Pablo Street, Los Angeles, CA 90033, USA.
Woojin AnDepartment of Biochemistry and Molecular Biology, University of Southern California, Norris Comprehensive Cancer Center, Los Angeles, CA 90033, USA woojinan@usc.edu.
University of Southern California · USChungbuk National University · KRThe University of Texas at Austin · USUSC Norris Comprehensive Cancer Center · US

Funding

ROLE OF HISTONE H4 N-TERMINAL TAIL IN TRANSCRIPTION REGULATIONR01GM084209 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI AN, WOOJIN · 2008 to 2012
$1.8M
NIGMS NIH HHS GM84209
6 · The paper itself

Abstract

SET and MYND domain containing protein 3 (SMYD3) is a histone methyltransferase, which has been implicated in cell growth and cancer pathogenesis. Increasing evidence suggests that SMYD3 can influence distinct oncogenic processes by acting as a gene-specific transcriptional regulator. However, the mechanistic aspects of SMYD3 transactivation and whether SMYD3 acts in concert with other transcription modulators remain unclear. Here, we show that SMYD3 interacts with the human positive coactivator 4 (PC4) and that such interaction potentiates a group of genes whose expression is linked to cell proliferation and invasion. SMYD3 cooperates functionally with PC4, because PC4 depletion results in the loss of SMYD3-mediated H3K4me3 and target gene expression. Individual depletion of SMYD3 and PC4 diminishes the recruitment of both SMYD3 and PC4, indicating that SMYD3 and PC4 localize at target genes in a mutually dependent manner. Artificial tethering of a SMYD3 mutant incapable of binding to its cognate elements and interacting with PC4 to target genes is sufficient for achieving an active transcriptional state in SMYD3-deficient cells. These observations suggest that PC4 contributes to SMYD3-mediated transactivation primarily by stabilizing SMYD3 occupancy at target genes. Together, these studies define expanded roles for SMYD3 and PC4 in gene regulation and provide an unprecedented documentation of their cooperative functions in stimulating oncogenic transcription.

Indexed as

Gene Expression Regulation, NeoplasticTranscriptional ActivationCell Line, TumorCell ProliferationDNA-Binding ProteinsHistone-Lysine N-MethyltransferaseHistonesHumansNeoplasm InvasivenessNeoplasmsTranscription FactorsDNA-Binding ProteinsHistone-Lysine N-MethyltransferaseHistonesSMYD3 protein, humanSUB1 protein, humanTranscription Factors

Identifiers

PMID26350217
PMCPMC4605318
OpenAlexW2109298991

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.