Evidence map›Paper›PMID 26348372›Full record

ArticleJournal of medical virology2016

HIV migration between blood plasma and cellular subsets before and after HIV therapy.

Jun Yong Choi, Antoine Chaillon, Jin Ok Oh, Jin Young Ahn, Hae Won Ann, In Young Jung, Mi-Young Ahn, Yong Duk Jeon, Nam Su Ku, Davey M Smith and 1 more

Open access · greenAbstract read
In one paragraph

Article in Journal of medical virology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact, top 96% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Jun Yong ChoiDepartment of Internal Medicine, Yonsei University College of Medicine, Seoul, South Korea.
Antoine ChaillonDepartment of Medicine, University of California San Diego, La Jolla, California.
Jin Ok OhAIDS Research Institute, Yonsei University College of Medicine, Seoul, South Korea.
Jin Young AhnDepartment of Internal Medicine, Yonsei University College of Medicine, Seoul, South Korea.
Hae Won AnnDepartment of Internal Medicine, Yonsei University College of Medicine, Seoul, South Korea.
In Young JungDepartment of Internal Medicine, Yonsei University College of Medicine, Seoul, South Korea.
Mi-Young AhnDepartment of Internal Medicine, Yonsei University College of Medicine, Seoul, South Korea.
Yong Duk JeonDepartment of Internal Medicine, Yonsei University College of Medicine, Seoul, South Korea.
Nam Su KuDepartment of Internal Medicine, Yonsei University College of Medicine, Seoul, South Korea.
Davey M SmithDepartment of Medicine, University of California San Diego, La Jolla, California.
June Myung KimDepartment of Internal Medicine, Yonsei University College of Medicine, Seoul, South Korea.
Yonsei University · KRVA San Diego Healthcare System · US

Funding

VirologyP30AI036214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI David Mitchell Smith · 1994 to 2026
$78.4M
STRUCTURAL NEUROIMAGING COREP30MH062512 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DAVID J MOORE · 2001 to 2026
$50.4M
Molecular Epidemiology for HIV Prevention for Drug Users and Other Risk Groups DP1DA034978 · NIDA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SMITH, DAVID MITCHELL · 2012 to 2016
$4.1M
A Multi-Site Investigation into the Effect of HIV Clade on Neurocognitive ImpairmR01MH083552 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SMITH, DAVID MITCHELL · 2008 to 2012
$3.3M
Mentoring Translational Research in HIVK24AI100665 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SMITH, DAVID MITCHELL · 2012 to 2021
$1.5M
NIAID NIH HHS AI036214NIAID NIH HHS AI100665NIAID NIH HHS K24 AI100665NIAID NIH HHS P30 AI036214NIDA NIH HHS DA034978NIDA NIH HHS DP1 DA034978NIMH NIH HHS MH083552NIMH NIH HHS P30 MH062512NIMH NIH HHS R01 MH083552
6 · The paper itself

Abstract

The cellular source of HIV RNA circulating in blood plasma remains unclear. Here, we investigated whether sequence analysis of HIV RNA populations circulating before combination antiretroviral therapy (cART) and HIV DNA populations in cellular subsets (CS) after cART could identify the cellular sources of circulating HIV RNA. Blood was collected from five subjects at cART initiation and again 6 months later. Naïve CD4+ T cells, resting central memory and effector memory CD4+ T cells, activated CD4+ T cells, monocytes, and natural killer cells were sorted using a fluorescence-activated cell sorter. HIV-1 env C2V3 sequences from HIV RNA in blood plasma and HIV DNA in CSs were generated using single genome sequencing. Sequences were evaluated for viral compartmentalization (Fst test) and migration events (MEs; Slatkin Maddison and cladistic measures) between blood plasma and each CS. Viral compartmentalization was observed in 88% of all cellular subset comparisons (range: 77-100% for each subject). Most observed MEs were directed from blood plasma to CSs (52 MEs, 85.2%). In particular, there was only viral movement from plasma to NK cells (15 MEs), monocytes (seven MEs), and naïve cells (five ME). We observed a total of nine MEs from activated CD4 cells (2/9 MEs), central memory T cells (3/9 MEs), and effector memory T cells (4/9 MEs) to blood plasma. Our results revealed that the HIV RNA population in blood plasma plays an important role in seeding various cellular reservoirs and that the cellular source of the HIV RNA population is activated central memory and effector memory T cells.

Indexed as

AdultAnti-Retroviral AgentsDNA, Viralenv Gene Products, Human Immunodeficiency VirusHIV-1HIV InfectionsHumansLeukocytes, MononuclearMaleMiddle AgedPlasmaRNA, ViralSequence Analysis, DNAAnti-Retroviral AgentsDNA, Viralenv Gene Products, Human Immunodeficiency VirusRNA, Viralantiretroviral therapycladistics analysiscompartmentalizationHIVreservoirviremia

Identifiers

PMID26348372
PMCPMC4731240
OpenAlexW1947353372

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.