Evidence map›Paper›PMID 26348036›Full record

ArticlePloS one2015

Impact of Residual Inducer on Titratable Expression Systems.

Taliman Afroz, Michelle L Luo, Chase L Beisel

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 94% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Taliman AfrozDepartment of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, North Carolina, United States of America.
Michelle L LuoDepartment of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, North Carolina, United States of America.
Chase L BeiselDepartment of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, North Carolina, United States of America.
North Carolina State University · US

Funding

High-Throughput Assay Development for the Discovery of Small Molecule InhibitorsR56AI103557 · NIAID · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI BEISEL, CHASE LAWRENCE · 2013 to 2013
$201k
NIAID NIH HHS 1R56AI103557-01A1NIAID NIH HHS R56 AI103557
6 · The paper itself

Abstract

Inducible expression systems are widely employed for the titratable control of gene expression, yet molecules inadvertently present in the growth medium or synthesized by the host cells can alter the response profile of some of these systems. Here, we explored the quantitative impact of these residual inducers on the apparent response properties of inducible systems. Using a simple mathematical model, we found that the presence of residual inducer shrinks the apparent dynamic range and causes the apparent Hill coefficient to converge to one. We also found that activating systems were more sensitive than repressing systems to the presence of residual inducer and the response parameters were most heavily dependent on the original Hill coefficient. Experimental interrogation of common titratable systems based on an L-arabinose inducible promoter or a thiamine pyrophosphate-repressing riboswitch in Escherichia coli confirmed the predicted trends. We finally found that residual inducer had a distinct effect on "all-or-none" systems, which exhibited increased sensitivity to the added inducer until becoming fully induced. Our findings indicate that residual inducer or repressor alters the quantitative response properties of titratable systems, impacting their utility for scientific discovery and pathway engineering.

Indexed as

Gene Expression Regulation, BacterialArabinoseBacterial ProteinsEscherichia coliFlow CytometryModels, TheoreticalPlasmidsPromoter Regions, GeneticRiboswitchThiamineThiamine PyrophosphateArabinoseBacterial ProteinsRiboswitchThiamineThiamine PyrophosphateThiC protein, Bacteria

Identifiers

PMID26348036
PMCPMC4562711
OpenAlexW2139201426

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.