ArticleFrontiers in plant science2015
Deciphering the conserved genetic loci implicated in plant disease control through comparative genomics of Bacillus amyloliquefaciens subsp. plantarum.
Article in Frontiers in plant science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
24 citing papers in PubMed, 69 citations in OpenAlex.
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- Antioxidant and drought-acclimation responses in UV-B-exposed transgenic Nicotiana tabacum displaying constitutive overproduction of HPhotochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2023Article
- Molecular characterization and antifungal activity of lipopeptides produced from Bacillus subtilis against plant fungal pathogen Alternaria alternata.BMC microbiology · 2023Article
- Identification and Characterization ofFrontiers in microbiology · 2022Article
- Cadmium phytoremediation potential of Deenanath grass (Pennisetum pedicellatum) and the assessment of bacterial communities in the rhizospheric soil.Environmental science and pollution research international · 2022Article
- Surfactin Stimulated by Pectin Molecular Patterns and Root Exudates Acts as a Key Driver of themBio · 2021Article
- Influence of seasonal changes and salinity on spinach phyllosphere bacterial functional assemblage.PloS one · 2021Article
- Enhanced biological control of root-knot nematode,Journal of nematology · 2021Article
- The antagonistic mechanism of Bacillus velezensis ZW10 against rice blast disease: Evaluation of ZW10 as a potential biopesticide.PloS one · 2021Article
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- Reclassification of the biocontrol agentsMicrobiology (Reading, England) · 2020Article
- Agrobacterium tumefaciens C58 presence affects Bacillus velezensis 32a ecological fitness in the tomato rhizosphere.Environmental science and pollution research international · 2020Article
- Pectin-Rich Amendment Enhances Soybean Growth Promotion and Nodulation Mediated byPlants (Basel, Switzerland) · 2019Article
- Metabolic and proteomic alteration in phytohormone-producing endophytic Bacillus amyloliquefaciens RWL-1 during methanol utilization.Metabolomics : Official journal of the Metabolomic Society · 2019Article
- Plant growth-promoting activity of beta-propeller protein YxaL secreted from Bacillus velezensis strain GH1-13.PloS one · 2019Article
- Draft Genome Sequence ofGenome announcements · 2017Article
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- Taxonomy and systematics of plant probiotic bacteria in the genomic era.AIMS microbiology · 2017Review
Corrections and comments
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Authors and funding
12 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
To understand the growth-promoting and disease-inhibiting activities of plant growth-promoting rhizobacteria (PGPR) strains, the genomes of 12 Bacillus subtilis group strains with PGPR activity were sequenced and analyzed. These B. subtilis strains exhibited high genomic diversity, whereas the genomes of B. amyloliquefaciens strains (a member of the B. subtilis group) are highly conserved. A pairwise BLASTp matrix revealed that gene family similarity among Bacillus genomes ranges from 32 to 90%, with 2839 genes within the core genome of B. amyloliquefaciens subsp. plantarum. Comparative genomic analyses of B. amyloliquefaciens strains identified genes that are linked with biological control and colonization of roots and/or leaves, including 73 genes uniquely associated with subsp. plantarum strains that have predicted functions related to signaling, transportation, secondary metabolite production, and carbon source utilization. Although B. amyloliquefaciens subsp. plantarum strains contain gene clusters that encode many different secondary metabolites, only polyketide biosynthetic clusters that encode difficidin and macrolactin are conserved within this subspecies. To evaluate their role in plant pathogen biocontrol, genes involved in secondary metabolite biosynthesis were deleted in a B. amyloliquefaciens subsp. plantarum strain, revealing that difficidin expression is critical in reducing the severity of disease, caused by Xanthomonas axonopodis pv. vesicatoria in tomato plants. This study defines genomic features of PGPR strains and links them with biocontrol activity and with host colonization.
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