Evidence map›Paper›PMID 26347030›Full record

ReviewNature reviews. Genetics2015

Elucidating the molecular architecture of adaptation via evolve and resequence experiments.

Anthony Long, Gianni Liti, Andrej Luptak, Olivier Tenaillon

Abstract readReview
In one paragraph

Review in Nature reviews. Genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 131 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
131citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

131 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Beyond Fixation: Persistent Genetic Variation Under Intense Selection.bioRxiv : the preprint server for biology · 2026
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Macrolide resistance trajectories across threeFrontiers in microbiology · 2026
    Article
  16. Evolutionary cell biology comes of age.Journal of cell science · 2025
    Article
  17. Article
  18. Article
  19. Article
  20. Review

71 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Anthony LongDepartment of Ecology and Evolutionary Biology, University of California, Irvine, California 92697, USA.
Gianni LitiInstitute for Research on Cancer and Ageing of Nice (IRCAN), Centre national de la recherche scientifique (CNRS) Unité Mixte de Recherche (UMR) 7284 - Institut National de la Santé et de la Recherche Médicale (INSERM) U1081 - Université de Nice Sophia Antipolis, 06107 Nice, France.
Andrej LuptakDepartment of Pharmaceutical Sciences, University of California, Irvine, California 92697, USA.
Olivier TenaillonInstitut National de la Santé et de la Recherche Médicale (INSERM), Université Denis Diderot Paris 7, Unité Mixte de Recherche (UMR) 1137, Infection, Antimicrobials, Modelling, Evolution (IAME), 75205 Paris, France.

Funding

Luminescent RNAsR01GM094929 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI LUPTAK, ANDREJ · 2010 to 2013
$1.2M
European Research Council 310944NIGMS NIH HHS R01 GM094929
6 · The paper itself

Abstract

Evolve and resequence (E&R) experiments use experimental evolution to adapt populations to a novel environment, then next-generation sequencing to analyse genetic changes. They enable molecular evolution to be monitored in real time on a genome-wide scale. Here, we review the field of E&R experiments across diverse systems, ranging from simple non-living RNA to bacteria, yeast and the complex multicellular organism Drosophila melanogaster. We explore how different evolutionary outcomes in these systems are largely consistent with common population genetics principles. Differences in outcomes across systems are largely explained by different starting population sizes, levels of pre-existing genetic variation, recombination rates and adaptive landscapes. We highlight emerging themes and inconsistencies that future experiments must address.

Indexed as

Selection, GeneticAdaptation, PhysiologicalAnimalsBacteriaBiological EvolutionDrosophila melanogasterEpistasis, GeneticEvolution, MolecularGenetics, MicrobialGenetics, PopulationHigh-Throughput Nucleotide SequencingMutationRNA Folding

Identifiers

PMID26347030
PMCPMC4733663

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.