Evidence map›Paper›PMID 26346622›Full record

ArticleClinical genetics2016

IRF6 mutation screening in non-syndromic orofacial clefting: analysis of 1521 families.

E J Leslie, D C Koboldt, C J Kang, L Ma, J T Hecht, G L Wehby, K Christensen, A E Czeizel, F W-B Deleyiannis, R S Fulton and 5 more

Abstract read
In one paragraph

Article in Clinical genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 54 citations in OpenAlex.

  1. Trial
  2. The role of Rho GTPases in facial morphogenesis.Developmental dynamics : an official publication of the American Association of Anatomists · 2026
    Review
  3. Article
  4. Comprehensive analysis ofmedRxiv : the preprint server for health sciences · 2026
    Article
  5. Article
  6. Article
  7. DNA Methylation Effects on Van der Woude Syndrome Phenotypic Variability.The Cleft palate-craniofacial journal : official publication of the American Cleft Palate-Craniofacial Association · 2025
    Article
  8. Review
  9. Neural crest and periderm-specific requirements ofbioRxiv : the preprint server for biology · 2024
    Article
  10. Rare variants found in clinical gene panels illuminate the genetic and allelic architecture of orofacial clefting.Genetics in medicine : official journal of the American College of Medical Genetics · 2023
    Article
  11. Article
  12. Article
  13. Orofacial Cleft and Mandibular Prognathism-Human Genetics and Animal Models.International journal of molecular sciences · 2022
    Review
  14. Article
  15. Observational
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 10 institutions in 4 countries.

E J LeslieCenter for Craniofacial and Dental Genetics, Department of Oral Biology, School of Dental Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
D C KoboldtThe Genome Institute, Washington University School of Medicine, St. Louis, MO, USA.
C J KangThe Genome Institute, Washington University School of Medicine, St. Louis, MO, USA.
L MaDepartment of Oral Maxillofacial Surgery, Peking University School of Stomatology, Beijing, China.
J T HechtDepartment of Pediatrics, University of Texas Health Science Center at Houston, Houston, TX, USA.
G L WehbyDepartment of Health Management and Policy, College of Public Health, University of Iowa, Iowa City, IA, USA.
K ChristensenDepartment of Epidemiology, Institute of Public Health, University of Southern Denmark, Odense, Denmark.
A E CzeizelFoundation for the Community Control of Hereditary Diseases, Budapest, Hungary.
F W-B DeleyiannisDepartment of Surgery, Plastic and Reconstructive Surgery, University of Colorado School of Medicine, Denver, CO, USA.
R S FultonThe Genome Institute, Washington University School of Medicine, St. Louis, MO, USA.
R K WilsonThe Genome Institute, Washington University School of Medicine, St. Louis, MO, USA.
T H BeatyDepartment of Epidemiology, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD, USA.
B C SchutteDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, USA.
J C MurrayDepartment of Pediatrics, Carver College of Medicine, University of Iowa, Iowa City, IA, USA.
M L MarazitaCenter for Craniofacial and Dental Genetics, Department of Oral Biology, School of Dental Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
Washington University in St. Louis · USUniversity of Iowa · USUniversity of Pittsburgh · USJohns Hopkins University · USMichigan State University · USNational Center for Epidemiology · HUPeking University · CNThe University of Texas Health Science Center at Houston · USUniversity of Colorado Denver · USUniversity of Southern Denmark · DK

Funding

Extending the Phenotype of Nonsyndromic Orofacial CleftsR01DE016148 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MARAZITA, MARY L., WEINBERG, SETH M · 2004 to 2018
$19.7M
MOLECULAR STUDIES IN NONSYNDROMIC CLEFT LIP AND PALATER01DE011931 · NIDCR · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI BLANTON, SUSAN HALLORAN, HECHT, JACQUELINE T · 1999 to 2017
$7.6M
Molecular Genetic Epidemiology of Cleft Lip and PalateR37DE008559 · NIDCR · UNIVERSITY OF IOWA · PI MURRAY, JEFFREY C · 2004 to 2013
$6.8M
International Genetic Epidemiology of Oral CleftsR01DE014581 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI BEATY, TERRI H · 2004 to 2013
$6.6M
International Consortium to Identify Genes and Interactions Controlling Oral ClefU01DE018993 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI BEATY, TERRI H · 2007 to 2008
$1.6M
MOLECULAR GENETIC EPIDEMIOLOGY OF CLEFT LIP AND PALATER01DE008559 · NIDCR · UNIVERSITY OF IOWA · PI MURRAY, JEFFREY C · 1988 to 2003
$1.5M
GENETIC MAPPING STUDIES OF ORAL-FACIAL CLEFTS IN CHINAR01DE009886 · NIDCR · VIRGINIA COMMONWEALTH UNIVERSITY · PI MARAZITA, MARY L · 1992 to 2002
$1.0M
Genetics of Craniofacial Disorders and Related PhenotypesR00DE025060 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LESLIE-CLARKSON, ELIZABETH JANE · 2017 to 2019
$732k
Planning International Orofacial Cleft Genetic StudiesR21DE016930 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MARAZITA, MARY L · 2006 to 2007
$293k
Sequencing of significant signals from cleft lip GWASU01HG005925 · NHGRI · UNIVERSITY OF IOWA · PI MURRAY, JEFFREY C · 2010 to 2010
$238k
Genetics of Craniofacial Disorders and Related PhenotypesK99DE025060 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LESLIE-CLARKSON, ELIZABETH JANE · 2015 to 2016
$188k
NHGRI NIH HHS U01 HG005925NIDCR NIH HHS K99 DE025060NIDCR NIH HHS R00 DE025060NIDCR NIH HHS R01 DE008559NIDCR NIH HHS R01 DE009886NIDCR NIH HHS R01 DE011931NIDCR NIH HHS R01 DE014581NIDCR NIH HHS R01 DE016148NIDCR NIH HHS R21 DE016930NIDCR NIH HHS R37 DE008559NIDCR NIH HHS U01 DE018993
6 · The paper itself

Abstract

Van der Woude syndrome (VWS) is an autosomal dominant malformation syndrome characterized by orofacial clefting (OFC) and lower lip pits. The clinical presentation of VWS is variable and can present as an isolated OFC, making it difficult to distinguish VWS cases from individuals with non-syndromic OFCs. About 70% of causal VWS mutations occur in IRF6, a gene that is also associated with non-syndromic OFCs. Screening for IRF6 mutations in apparently non-syndromic cases has been performed in several modestly sized cohorts with mixed results. In this study, we screened 1521 trios with presumed non-syndromic OFCs to determine the frequency of causal IRF6 mutations. We identified seven likely causal IRF6 mutations, although a posteriori review identified two misdiagnosed VWS families based on the presence of lip pits. We found no evidence for association between rare IRF6 polymorphisms and non-syndromic OFCs. We combined our results with other similar studies (totaling 2472 families) and conclude that causal IRF6 mutations are found in 0.24-0.44% of apparently non-syndromic OFC families. We suggest that clinical mutation screening for IRF6 be considered for certain family patterns such as families with mixed types of OFCs and/or autosomal dominant transmission.

Indexed as

MutationAbnormalities, MultipleAdultAsian PeopleBrainChildCleft LipCleft PalateCystsDiagnosis, DifferentialDNA Mutational AnalysisFemaleGene ExpressionGenetic TestingGenome-Wide Association StudyGenotypeInterferon Regulatory FactorsIRF6 protein, humaninterferon regulatory factor 6mutation screeningnon-syndromic oral cleftssyndromic cleft

Identifiers

PMID26346622
PMCPMC4783275
OpenAlexW1872109630

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.