Evidence map›Paper›PMID 26345617›Full record

ArticleNature communications2015

Modular pathway rewiring of Saccharomyces cerevisiae enables high-level production of L-ornithine.

Jiufu Qin, Yongjin J Zhou, Anastasia Krivoruchko, Mingtao Huang, Lifang Liu, Sakda Khoomrung, Verena Siewers, Bo Jiang, Jens Nielsen

Abstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed.

  1. System reconstruction ofSynthetic and systems biotechnology · 2027
    Article
  2. Review
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  7. Article
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  11. Overexpression of arginase geneSynthetic and systems biotechnology · 2024
    Article
  12. A promoter-RBS library for fine-tuning gene expression inApplied and environmental microbiology · 2024
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Jiufu QinState Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu 214122, China.
Yongjin J ZhouDepartment of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg SE-412 96, Sweden.
Anastasia KrivoruchkoDepartment of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg SE-412 96, Sweden.
Mingtao HuangDepartment of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg SE-412 96, Sweden.
Lifang LiuDepartment of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg SE-412 96, Sweden.
Sakda KhoomrungDepartment of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg SE-412 96, Sweden.
Verena SiewersDepartment of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg SE-412 96, Sweden.
Bo JiangState Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu 214122, China.
Jens NielsenDepartment of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg SE-412 96, Sweden.ORCID http://orcid.org/0000-0002-9955-6003

Funding

European Research Council 247013
6 · The paper itself

Abstract

Baker's yeast Saccharomyces cerevisiae is an attractive cell factory for production of chemicals and biofuels. Many different products have been produced in this cell factory by reconstruction of heterologous biosynthetic pathways; however, endogenous metabolism by itself involves many metabolites of industrial interest, and de-regulation of endogenous pathways to ensure efficient carbon channelling to such metabolites is therefore of high interest. Furthermore, many of these may serve as precursors for the biosynthesis of complex natural products, and hence strains overproducing certain pathway intermediates can serve as platform cell factories for production of such products. Here we implement a modular pathway rewiring (MPR) strategy and demonstrate its use for pathway optimization resulting in high-level production of L-ornithine, an intermediate of L-arginine biosynthesis and a precursor metabolite for a range of different natural products. The MPR strategy involves rewiring of the urea cycle, subcellular trafficking engineering and pathway re-localization, and improving precursor supply either through attenuation of the Crabtree effect or through the use of controlled fed-batch fermentations, leading to an L-ornithine titre of 1,041±47 mg l(-1) with a yield of 67 mg (g glucose)(-1) in shake-flask cultures and a titre of 5.1 g l(-1) in fed-batch cultivations. Our study represents the first comprehensive study on overproducing an amino-acid intermediate in yeast, and our results demonstrate the potential to use yeast more extensively for low-cost production of many high-value amino-acid-derived chemicals.

Indexed as

Gene Expression Regulation, FungalMetabolic EngineeringOrnithineSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsOrnithineSaccharomyces cerevisiae Proteins

Identifiers

PMID26345617
PMCPMC4569842

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.