Evidence map›Paper›PMID 26344197›Full record

ArticleNature2015

Panorama of ancient metazoan macromolecular complexes.

Cuihong Wan, Blake Borgeson, Sadhna Phanse, Fan Tu, Kevin Drew, Greg Clark, Xuejian Xiong, Olga Kagan, Julian Kwan, Alexandr Bezginov and 19 more

Open access · greenAbstract read
In one paragraph

Article in Nature, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 314 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
314citing papers in PubMed, 2 pooled it
24.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

314 citing papers in PubMed, 2 syntheses or guidelines pooled it, 576 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
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  14. Review
  15. Multiplex mapping of protein-protein interaction interfaces.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  16. Impact of NbioRxiv : the preprint server for biology · 2025
    Article
  17. Article
  18. State-of-the-Art and Future Directions in Structural Proteomics.Molecular & cellular proteomics : MCP · 2025
    Review
  19. Multiplex mapping of protein-protein interaction interfaces.bioRxiv : the preprint server for biology · 2025
    Article
  20. Article

254 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

29 authors at 5 institutions in 3 countries.

Cuihong WanDonnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, Ontario M5S 3E1, Canada.
Blake BorgesonCenter for Systems and Synthetic Biology, Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, Texas 78712, USA.
Sadhna PhanseDonnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, Ontario M5S 3E1, Canada.
Fan TuCenter for Systems and Synthetic Biology, Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, Texas 78712, USA.
Kevin DrewCenter for Systems and Synthetic Biology, Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, Texas 78712, USA.
Greg ClarkDepartment of Medical Biophysics, Toronto, Ontario M5G 1L7, Canada.
Xuejian XiongDepartment of Molecular Genetics, University of Toronto, Toronto, Ontario M5S 1A8, Canada.
Olga KaganDonnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, Ontario M5S 3E1, Canada.
Julian KwanDonnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, Ontario M5S 3E1, Canada.
Alexandr BezginovDepartment of Medical Biophysics, Toronto, Ontario M5G 1L7, Canada.
Kyle ChessmanDepartment of Molecular Genetics, University of Toronto, Toronto, Ontario M5S 1A8, Canada.
Swati PalHospital for Sick Children, Toronto, Ontario M5G 1X8, Canada.
Graham CromarDepartment of Molecular Genetics, University of Toronto, Toronto, Ontario M5S 1A8, Canada.
Ophelia PapoulasCenter for Systems and Synthetic Biology, Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, Texas 78712, USA.
Zuyao NiDonnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, Ontario M5S 3E1, Canada.
Daniel R BoutzCenter for Systems and Synthetic Biology, Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, Texas 78712, USA.
Snejana StoilovaDonnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, Ontario M5S 3E1, Canada.
Pierre C HavugimanaDonnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, Ontario M5S 3E1, Canada.
Xinghua GuoDonnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, Ontario M5S 3E1, Canada.
Ramy H MaltyDepartment of Biochemistry, University of Regina, Regina, Saskatchewan S4S 0A2, Canada.
Mihail SarovMax Planck Institute of Molecular Cell Biology and Genetics, 01307 Dresden, Germany.
Jack GreenblattDonnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, Ontario M5S 3E1, Canada.
Mohan BabuDepartment of Biochemistry, University of Regina, Regina, Saskatchewan S4S 0A2, Canada.
W Brent DerryDepartment of Molecular Genetics, University of Toronto, Toronto, Ontario M5S 1A8, Canada.
Elisabeth R TillierDepartment of Medical Biophysics, Toronto, Ontario M5G 1L7, Canada.
John B WallingfordCenter for Systems and Synthetic Biology, Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, Texas 78712, USA.
John ParkinsonDepartment of Molecular Genetics, University of Toronto, Toronto, Ontario M5S 1A8, Canada.
Edward M MarcotteCenter for Systems and Synthetic Biology, Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, Texas 78712, USA.
Andrew EmiliDonnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, Ontario M5S 3E1, Canada.
University of Toronto · CAThe University of Texas at Austin · USHospital for Sick Children · CAUniversity of Regina · CAMax Planck Institute of Molecular Cell Biology and Genetics · DE

Funding

Next-Generation Proteomics: Massively Parallel Single-Molecule Protein IdentificaDP1GM106408 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI MARCOTTE, EDWARD M · 2012 to 2016
$3.8M
Proteomics of widespread, reversible protein assemblies in aging and aggregationR01GM076536 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI MARCOTTE, EDWARD M · 2006 to 2014
$2.9M
Reconstructing the eukaryotic cell cycle gene networkR01GM067779 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI MARCOTTE, EDWARD M · 2004 to 2012
$2.1M
Structural characterization of protein complexes involved in embryogenesis.F32GM112495 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI DREW, KEVIN · 2014 to 2017
$167k
Canadian Institutes of Health ResearchNIGMS NIH HHS DP1 GM106408NIGMS NIH HHS F32 GM112495NIGMS NIH HHS F32GM112495NIGMS NIH HHS R01 GM067779NIGMS NIH HHS R01 GM076536
6 · The paper itself

Abstract

Macromolecular complexes are essential to conserved biological processes, but their prevalence across animals is unclear. By combining extensive biochemical fractionation with quantitative mass spectrometry, here we directly examined the composition of soluble multiprotein complexes among diverse metazoan models. Using an integrative approach, we generated a draft conservation map consisting of more than one million putative high-confidence co-complex interactions for species with fully sequenced genomes that encompasses functional modules present broadly across all extant animals. Clustering reveals a spectrum of conservation, ranging from ancient eukaryotic assemblies that have probably served cellular housekeeping roles for at least one billion years, ancestral complexes that have accrued contemporary components, and rarer metazoan innovations linked to multicellularity. We validated these projections by independent co-fractionation experiments in evolutionarily distant species, affinity purification and functional analyses. The comprehensiveness, centrality and modularity of these reconstructed interactomes reflect their fundamental mechanistic importance and adaptive value to animal cell systems.

Indexed as

Evolution, MolecularProtein Interaction MapsAnimalsDatasets as TopicHumansMultiprotein ComplexesProtein Interaction MappingReproducibility of ResultsSystems BiologyTandem Mass SpectrometryMultiprotein Complexes

Identifiers

PMID26344197
PMCPMC5036527
OpenAlexW1777916189

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.