Evidence map›Paper›PMID 26344056›Full record

ArticleGastroenterology2015

Genetic Variants That Predispose to DNA Double-Strand Breaks in Lymphocytes From a Subset of Patients With Familial Colorectal Carcinomas.

Sanjeevani Arora, Hong Yan, Iltaeg Cho, Hua-Ying Fan, Biao Luo, Xiaowu Gai, Dale L Bodian, Joseph G Vockley, Yan Zhou, Elizabeth A Handorf and 8 more

Abstract read
In one paragraph

Article in Gastroenterology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 37 citations in OpenAlex.

  1. A Systematic Literature Review of Whole Exome and Genome Sequencing Population Studies of Genetic Susceptibility to Cancer.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2020
    Pooled it
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  3. Case Report: Expansion of theFrontiers in oncology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 1 country.

Sanjeevani AroraCancer Biology Program, Fox Chase Cancer Center, Philadelphia, Pennsylvania; Molecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, Pennsylvania.
Hong YanCancer Biology Program, Fox Chase Cancer Center, Philadelphia, Pennsylvania.
Iltaeg ChoDepartment of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania.
Hua-Ying FanDepartment of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania.
Biao LuoInstitute for Personalized Medicine, Fox Chase Cancer Center, Philadelphia, Pennsylvania.
Xiaowu GaiMassachusetts Eye and Ear Infirmary, Harvard Medical School, Boston, Massachusetts.
Dale L BodianInova Translational Medicine Institute, Inova Health System, Falls Church, Virginia.
Joseph G VockleyInova Translational Medicine Institute, Inova Health System, Falls Church, Virginia.
Yan ZhouBiostatistics, Fox Chase Cancer Center, Philadelphia, Pennsylvania.
Elizabeth A HandorfBiostatistics, Fox Chase Cancer Center, Philadelphia, Pennsylvania.
Brian L EglestonMolecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, Pennsylvania; Biostatistics, Fox Chase Cancer Center, Philadelphia, Pennsylvania.
Mark D AndrakeMolecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, Pennsylvania.
Emmanuelle NicolasGenomics, Fox Chase Cancer Center, Philadelphia, Pennsylvania.
Ilya G SerebriiskiiMolecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, Pennsylvania; Kazan Federal University, Kazan, Russia.
Timothy J YenCancer Biology Program, Fox Chase Cancer Center, Philadelphia, Pennsylvania.
Michael J HallMedical Oncology, Fox Chase Cancer Center, Philadelphia, Pennsylvania; Clinical Genetics, Fox Chase Cancer Center, Philadelphia, Pennsylvania.
Erica A GolemisMolecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, Pennsylvania. Electronic address: erica.golemis@fccc.edu.
Greg H EndersCancer Biology Program, Fox Chase Cancer Center, Philadelphia, Pennsylvania; Medicine, Fox Chase Cancer Center, Philadelphia, Pennsylvania. Electronic address: greg.enders@fccc.edu.
Fox Chase Cancer Center · USInova Health System · USUniversity of Pennsylvania · USMassachusetts Eye and Ear Infirmary · US

Funding

WORD PROCESSING CENTER--COREP30CA006927 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI Margaret von Mehren · 1985 to 2026
$138.8M
Werner Syndrome Protein, DNA End Processing, and Double-Strand Break RepairR01GM057962 · NIGMS · RESEARCH INST OF FOX CHASE CAN CTR · PI YAN, HONG · 1998 to 2015
$4.5M
ROLES OF HEF1 IN CELL DIFFERENTIATION AND SURVIVALR01CA063366 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI GOLEMIS, ERICA A. · 1998 to 2013
$3.9M
Basis for Distinct Functions of ATP-Dependent Chromatin Remodeling ComplexesR01GM084983 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI FAN, HUA-YING · 2008 to 2012
$1.6M
Basis for genotoxic stress relief by ATP-dependent chromatin remodelersR01GM115888 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI FAN, HUA-YING · 2015 to 2018
$1.2M
NCI NIH HHS P30 CA006927NCI NIH HHS R01 CA063366NIGMS NIH HHS R01 GM057962NIGMS NIH HHS R01 GM084983NIGMS NIH HHS R01 GM115888
6 · The paper itself

Abstract

BACKGROUND &

aimsDNA structural lesions are prevalent in sporadic colorectal cancer. Therefore, we proposed that gene variants that predispose to DNA double-strand breaks (DSBs) would be found in patients with familial colorectal carcinomas of an undefined genetic basis (UFCRC).

methodsWe collected primary T cells from 25 patients with UFCRC and matched patients without colorectal cancer (controls) and assayed for DSBs. We performed exome sequence analyses of germline DNA from 20 patients with UFCRC and 5 undiagnosed patients with polyposis. The prevalence of identified variants in genes linked to DNA integrity was compared with that of individuals without a family history of cancer. The effects of representative variants found to be associated with UFCRC was confirmed in functional assays with HCT116 cells.

resultsPrimary T cells from most patients with UFCRC had increased levels of the DSB marker γ(phosphorylated)histone2AX (γH2AX) after treatment with DNA damaging agents, compared with T cells from controls (P < .001). Exome sequence analysis identified a mean 1.4 rare variants per patient that were predicted to disrupt functions of genes relevant to DSBs. Controls (from public databases) had a much lower frequency of variants in the same genes (P < .001). Knockdown of representative variant genes in HCT116 CRC cells increased γH2AX. A detailed analysis of immortalized patient-derived B cells that contained variants in the Werner syndrome, RecQ helicase-like gene (WRN, encoding T705I), and excision repair cross-complementation group 6 (ERCC6, encoding N180Y) showed reduced levels of these proteins and increased DSBs, compared with B cells from controls. This phenotype was rescued by exogenous expression of WRN or ERCC6. Direct analysis of the recombinant variant proteins confirmed defective enzymatic activities.

conclusionsThese results provide evidence that defects in suppression of DSBs underlie some cases of UFCRC; these can be identified by assays of circulating lymphocytes. We specifically associated UFCRC with variants in WRN and ERCC6 that reduce the capacity for repair of DNA DSBs. These observations could lead to a simple screening strategy for UFCRC, and provide insight into the pathogenic mechanisms of colorectal carcinogenesis.

Indexed as

DNA Breaks, Double-StrandedGenetic VariationAdultAgedAged, 80 and overBiomarkers, TumorCase-Control StudiesColorectal NeoplasmsComputational BiologyDatabases, GeneticDNA HelicasesDNA RepairDNA Repair EnzymesExodeoxyribonucleasesExomeFemaleBiomarkers, TumorDNA HelicasesDNA Repair EnzymesERCC6 protein, humanExodeoxyribonucleasesH2AX protein, humanHistonesMutagensPoly-ADP-Ribose Binding ProteinsRecQ HelicasesWerner Syndrome HelicaseWRN protein, humanColon CancerGenomic InstabilityHereditary CancerTumorigenesis

Identifiers

PMID26344056
PMCPMC4663158
OpenAlexW1506356232

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.