Evidence map›Paper›PMID 26343384›Full record

ArticleNature genetics2015

SMARCA4 inactivation defines a group of undifferentiated thoracic malignancies transcriptionally related to BAF-deficient sarcomas.

Francois Le Loarer, Sarah Watson, Gaelle Pierron, Vincent Thomas de Montpreville, Stelly Ballet, Nelly Firmin, Aurelie Auguste, Daniel Pissaloux, Sandrine Boyault, Sandrine Paindavoine and 22 more

Abstract read
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In one paragraph

Article in Nature genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 196 papers.

0numbers the graph read from it
0cells of the map it votes in
196citing papers in PubMed
8.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

196 citing papers in PubMed, 357 citations in OpenAlex.

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  20. Endoscopic ultrasound-guided fine-needle biopsy for diagnosis ofProceedings (Baylor University. Medical Center) · 2026
    Article

136 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors at 13 institutions in 1 country.

Francois Le LoarerCancer Research Center of Lyon, INSERM U1052, Lyon, France.ORCID http://orcid.org/0000-0001-8582-9819
Sarah WatsonGenetics and Biology of Cancer Unit, Institut Curie Research Center, Paris Sciences et Lettres Research University, Paris, France.
Gaelle PierronInstitut Curie Hospital Group, Unité de Génétique Somatique, Paris, France.
Vincent Thomas de MontprevilleCentre Chirurgical Marie Lannelongue, Department of Pathology, Le Plessis Robinson, France.
Stelly BalletInstitut Curie Hospital Group, Unité de Génétique Somatique, Paris, France.
Nelly FirminInstitut de Cancerologie de Montpellier, Department of Oncology, Montpellier, France.
Aurelie AugusteGustave Roussy, INSERM U981, Villejuif, France.
Daniel PissalouxCentre Leon Berard, Department of Pathology, Lyon, France.
Sandrine BoyaultCentre Leon Berard, Department of Genetics, Lyon, France.
Sandrine PaindavoineCentre Leon Berard, Department of Pathology, Lyon, France.
Pierre Joseph DechelotteCentre Hospitalier Universitaire (CHU) de Clermont Ferrand, Department of Pathology, Clermont Ferrand, France.
Benjamin BesseGustave Roussy, Department of Cancer Medicine, Villejuif, France.
Jean Michel VignaudCHU Nancy, Department of Pathology, Nancy, France.
Marie BrevetUniversité Claude Bernard Lyon 1, Lyon, France.
Elie FadelUniversité Paris Sud, Paris, France.
Wilfrid RicherGenetics and Biology of Cancer Unit, Institut Curie Research Center, Paris Sciences et Lettres Research University, Paris, France.
Isabelle TreilleuxCentre Leon Berard, Department of Pathology, Lyon, France.
Julien Masliah-PlanchonINSERM U830, Institut Curie Research Center, Paris, France.
Mojgan Devouassoux-ShisheboranHospices Civils de Lyon, Hôpital de la Croix Rousse, Department of Pathology, Lyon, France.
Gerard ZalcmanCHU Caen, Department of Pneumology and Thoracic Oncology, Caen, France.
Yves AlloryAssistance Publique-Hôpitaux de Paris (AP-HP), Hôpitaux Universitaires Henri Mondor, Plateforme de Ressources Biologiques, Creteil, France.
Franck BourdeautInstitut Curie Hospital Group, Unité de Génétique Somatique, Paris, France.
Francoise Thivolet-BejuiUniversité Claude Bernard Lyon 1, Lyon, France.
Dominique Ranchere-VinceCentre Leon Berard, Department of Pathology, Lyon, France.
Nicolas GirardUniversité Claude Bernard Lyon 1, Lyon, France.
Sylvie LantuejoulCHU Grenoble, Department of Pathology, Grenoble, France.
Francoise Galateau-SalléCHU Caen, Department of Pathology, Caen, France.
Jean Michel CoindreInstitut Bergonie, Department of Pathology, Bordeaux, France.
Alexandra LearyGustave Roussy, INSERM U981, Villejuif, France.
Olivier DelattreGenetics and Biology of Cancer Unit, Institut Curie Research Center, Paris Sciences et Lettres Research University, Paris, France.
Jean Yves BlayCancer Research Center of Lyon, INSERM U1052, Lyon, France.
Franck TirodeGenetics and Biology of Cancer Unit, Institut Curie Research Center, Paris Sciences et Lettres Research University, Paris, France.ORCID http://orcid.org/0000-0003-4731-7817
Inserm · FRCentre Léon Bérard · FRUniversité Claude Bernard Lyon 1 · FRInstitut Curie · FRUniversité Paris-Sud · FRCentre Chirurgical Marie Lannelongue · FRCentre Hospitalier Régional et Universitaire de Nancy · FRCentre Hospitalier Universitaire de Clermont-Ferrand · FRCentre Hospitalier Universitaire de Grenoble · FRHôpital de la Croix-Rousse · FRInstitut de Recherche en Cancérologie de Montpellier · FRUniversité de Bordeaux · FRUniversité Paris Sciences et Lettres · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

While investigating cohorts of unclassified sarcomas by RNA sequencing, we identified 19 cases with inactivation of SMARCA4, which encodes an ATPase subunit of BAF chromatin-remodeling complexes. Clinically, the cases were all strikingly similar, presenting as compressive mediastino-pulmonary masses in 30- to 35-year-old adults with a median survival time of 7 months. To help define the nosological relationships of these tumors, we compared their transcriptomic profiles with those of SMARCA4-mutated small-cell carcinomas of the ovary, hypercalcemic type (SCCOHTs), SMARCB1-inactivated malignant rhabdoid tumors (MRTs) and lung carcinomas (of which 10% display SMARCA4 mutations). Gene profiling analyses demonstrated that these tumors were distinct from lung carcinomas but related to MRTs and SCCOHTs. Transcriptome analyses, further validated by immunohistochemistry, highlighted strong expression of SOX2, a marker that supports the differential diagnosis of these tumors from SMARCA4-deficient lung carcinomas. The prospective recruitment of cases confirmed this new category of 'SMARCA4-deficient thoracic sarcomas' as readily recognizable in clinical practice, providing opportunities to tailor their therapeutic management.

Indexed as

Transcription, GeneticAdultDNA-Binding ProteinsDNA HelicasesHumansNuclear ProteinsSarcomaThoracic NeoplasmsTranscription FactorsBANF1 protein, humanDNA-Binding ProteinsDNA HelicasesNuclear ProteinsSMARCA4 protein, humanTranscription Factors

Identifiers

PMID26343384
OpenAlexW2133647396

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.