Evidence map›Paper›PMID 26342073›Full record

ReviewThe Journal of biological chemistry2015

Flexibility and Disorder in Gene Regulation: LacI/GalR and Hox Proteins.

Sarah E Bondos, Liskin Swint-Kruse, Kathleen S Matthews

Open access · hybridAbstract readReview
In one paragraph

Review in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Lactose repressor hinge domain independently binds DNA.Protein science : a publication of the Protein Society · 2018
    Article
  5. Article
  6. Article
  7. Article
  8. Regulation of Metabolic Pathways by MarR Family Transcription Factors.Computational and structural biotechnology journal · 2017
    Review
  9. Mechanisms of Specificity for Hox Factor Activity.Journal of developmental biology · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Sarah E BondosFrom the Department of Molecular and Cellular Medicine, Texas A&M Health Science Center, College Station, Texas 77843.
Liskin Swint-Krusethe Department of Biochemistry and Molecular Biology, the University of Kansas Medical Center, Kansas City, Kansas 66160, and.
Kathleen S Matthewsthe Department of Biosciences, Rice University, Houston, Texas 77251 ksm@rice.edu.
Rice University · USTexas A&M Health Science Center · USUniversity of Kansas · US

Funding

Heartland Institute for Clinical and Translational ResearchUL1TR000001 · NCATS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI BAROHN, RICHARD J. · 2012 to 2015
$13.0M
HEARTLAND INSTITUTE FOR CLINICAL AND TRANSLATIONAL RESEARCHUL1RR033179 · NCRR · UNIVERSITY OF KANSAS MEDICAL CENTER · PI BAROHN, RICHARD J. · 2011 to 2011
$3.2M
PHYSICAL AND GENETIC STUDIES OF REPRESSOR PROTEINSR01GM022441 · NIGMS · RICE UNIVERSITY · PI MATTHEWS, KATHLEEN S · 1985 to 2009
$1.7M
NCATS NIH HHS UL1 TR000001NCATS NIH HHS UL1TR000001NCRR NIH HHS UL1 RR033179NCRR NIH HHS UL1RR033179NIGMS NIH HHS GM22441NIGMS NIH HHS R01 GM022441
6 · The paper itself

Abstract

To modulate transcription, a variety of input signals must be sensed by genetic regulatory proteins. In these proteins, flexibility and disorder are emerging as common themes. Prokaryotic regulators generally have short, flexible segments, whereas eukaryotic regulators have extended regions that lack predicted secondary structure (intrinsic disorder). Two examples illustrate the impact of flexibility and disorder on gene regulation: the prokaryotic LacI/GalR family, with detailed information from studies on LacI, and the eukaryotic family of Hox proteins, with specific insights from investigations of Ultrabithorax (Ubx). The widespread importance of structural disorder in gene regulatory proteins may derive from the need for flexibility in signal response and, particularly in eukaryotes, in protein partner selection.

Indexed as

Gene Expression RegulationAmino Acid SequenceDNAHomeodomain ProteinsHumansLac RepressorsMolecular Sequence DataRepressor ProteinsDNAHomeodomain ProteinsLac RepressorsRepressor ProteinsDNADNA-binding proteinDNA operatorgene regulationHox proteinsintrinsic disorderLacI/GalR proteinsprotein flexibilityrepressor proteintranscription factorUltrabithorax

Identifiers

PMID26342073
PMCPMC4598980
OpenAlexW1908835540

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.