Evidence map›Paper›PMID 26342015›Full record

ArticleThe Plant cell2015

Anthocyanin Vacuolar Inclusions Form by a Microautophagy Mechanism.

Alexandra Chanoca, Nik Kovinich, Brian Burkel, Samantha Stecha, Andres Bohorquez-Restrepo, Takashi Ueda, Kevin W Eliceiri, Erich Grotewold, Marisa S Otegui

Open access · greenAbstract read
In one paragraph

Article in The Plant cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 83 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
83citing papers in PubMed, 1 pooled it
6.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

83 citing papers in PubMed, 1 synthesis or guideline pooled it, 181 citations in OpenAlex.

  1. Guideline
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

23 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Alexandra ChanocaDepartment of Botany, University of Wisconsin-Madison, Madison, Wisconsin 53706 Laboratory of Molecular and Cellular Biology, University of Wisconsin-Madison, Madison, Wisconsin 53706.
Nik KovinichCenter for Applied Plant Sciences, Department of Molecular Genetics and Department of Horticulture and Crop Science, The Ohio State University, Columbus, Ohio 43210.ORCID http://orcid.org/0000-0002-9396-6626
Brian BurkelLaboratory for Optical and Computational Instrumentation, University of Wisconsin-Madison, Madison, Wisconsin 53706.ORCID http://orcid.org/0000-0002-4170-3808
Samantha StechaDepartment of Botany, University of Wisconsin-Madison, Madison, Wisconsin 53706 Laboratory of Molecular and Cellular Biology, University of Wisconsin-Madison, Madison, Wisconsin 53706.ORCID http://orcid.org/0000-0002-6704-5647
Andres Bohorquez-RestrepoCenter for Applied Plant Sciences, Department of Molecular Genetics and Department of Horticulture and Crop Science, The Ohio State University, Columbus, Ohio 43210.ORCID http://orcid.org/0000-0001-8961-9173
Takashi UedaDepartment of Biological Sciences, University of Tokyo, Hongo, Bunkyo-ku Tokyo 113-0033, Japan.
Kevin W EliceiriLaboratory for Optical and Computational Instrumentation, University of Wisconsin-Madison, Madison, Wisconsin 53706.ORCID http://orcid.org/0000-0001-8678-670X
Erich GrotewoldCenter for Applied Plant Sciences, Department of Molecular Genetics and Department of Horticulture and Crop Science, The Ohio State University, Columbus, Ohio 43210.
Marisa S OteguiDepartment of Botany, University of Wisconsin-Madison, Madison, Wisconsin 53706 Laboratory of Molecular and Cellular Biology, University of Wisconsin-Madison, Madison, Wisconsin 53706 Department of Genetics, University of Wisconsin-Madison, Madison, Wisconsin 53706 otegui@wisc.edu.ORCID http://orcid.org/0000-0003-4699-6950
University of Wisconsin–Madison · USThe Ohio State University · USThe University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Anthocyanins are flavonoid pigments synthesized in the cytoplasm and stored inside vacuoles. Many plant species accumulate densely packed, 3- to 10-μm diameter anthocyanin deposits called anthocyanin vacuolar inclusions (AVIs). Despite their conspicuousness and importance in organ coloration, the origin and nature of AVIs have remained controversial for decades. We analyzed AVI formation in cotyledons of different Arabidopsis thaliana genotypes grown under anthocyanin inductive conditions and in purple petals of lisianthus (Eustoma grandiorum). We found that cytoplasmic anthocyanin aggregates in close contact with the vacuolar surface are directly engulfed by the vacuolar membrane in a process reminiscent of microautophagy. The engulfed anthocyanin aggregates are surrounded by a single membrane derived from the tonoplast and eventually become free in the vacuolar lumen like an autophagic body. Neither endosomal/prevacuolar trafficking nor the autophagy ATG5 protein is involved in the formation of AVIs. In Arabidopsis, formation of AVIs is promoted by both an increase in cyanidin 3-O-glucoside derivatives and by depletion of the glutathione S-transferase TT19. We hypothesize that this novel microautophagy mechanism also mediates the transport of other flavonoid aggregates into the vacuole.

Indexed as

AnthocyaninsArabidopsisArabidopsis ProteinsAutophagyBiological TransportCytoplasmEndoplasmic ReticulumFluorescenceGentianaceaeGlucosidesGlutathione TransferaseIntracellular MembranesMutationPlant CellsPlants, Genetically ModifiedSeedlingsAnthocyaninsArabidopsis Proteinscyanidin-3-O-beta-glucopyranosideGlucosidesGlutathione TransferaseTRANSPARENT TESTA 19 protein, Arabidopsis

Identifiers

PMID26342015
PMCPMC4815043
OpenAlexW2114708919

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.