Evidence map›Paper›PMID 26341465›Full record

ArticleThe EMBO journal2015

Postmitotic diversification of olfactory neuron types is mediated by differential activities of the HMG-box transcription factor SOX-2.

Amel Alqadah, Yi-Wen Hsieh, Berta Vidal, Chieh Chang, Oliver Hobert, Chiou-Fen Chuang

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 43 citations in OpenAlex.

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  16. A universal transportin protein drives stochastic choice of olfactory neurons via specific nuclear import of aProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  17. Review
  18. Article
  19. Asymmetric development of the nervous system.Developmental dynamics : an official publication of the American Association of Anatomists · 2018
    Review
  20. Mechanisms controlling diversification of olfactory sensory neuron classes.Cellular and molecular life sciences : CMLS · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Amel AlqadahDepartment of Biological Sciences, University of Illinois at Chicago, Chicago, IL, USA Molecular and Developmental Biology Graduate Program, University of Cincinnati, Cincinnati, OH, USA.
Yi-Wen HsiehDepartment of Biological Sciences, University of Illinois at Chicago, Chicago, IL, USA.
Berta VidalDepartment of Biological Sciences, Department of Biochemistry and Molecular Biophysics, Howard Hughes Medical Institute Columbia University, New York, NY, USA.
Chieh ChangDepartment of Biological Sciences, University of Illinois at Chicago, Chicago, IL, USA.
Oliver HobertDepartment of Biological Sciences, Department of Biochemistry and Molecular Biophysics, Howard Hughes Medical Institute Columbia University, New York, NY, USA chioufen.chuang@gmail.com or38@columbia.edu.
Chiou-Fen ChuangDepartment of Biological Sciences, University of Illinois at Chicago, Chicago, IL, USA chioufen.chuang@gmail.com or38@columbia.edu.
University of Illinois Chicago · USHoward Hughes Medical Institute · US

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
LIM HOMEOBOX GENE LIM-6 IN MOTOR NEURON DIFFERENTIATIONR01NS039996 · NINDS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Oliver Hobert · 2001 to 2026
$6.8M
Genetic analysis of dopaminergic neuron specification in C.elegansR01NS050266 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI HOBERT, OLIVER · 2004 to 2013
$3.4M
Specification of Stochastic Left-Right Asymmetric Neuronal Fates in C. elegansR01GM098026 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI CHUANG, CHIOU-FEN · 2012 to 2016
$1.5M
Understanding timing mechanisms for age-related decline in neuronal regenerationR01GM111320 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI CHANG, CHIEH · 2014 to 2019
$1.4M
Howard Hughes Medical InstituteNIGMS NIH HHS 5R01GM098026-05NIGMS NIH HHS 5R01GM111320-02NIGMS NIH HHS R01 GM098026NIGMS NIH HHS R01 GM111320NIH HHS P40 OD010440NINDS NIH HHS R01 NS039996NINDS NIH HHS R01NS039996-05NINDS NIH HHS R01 NS050266NINDS NIH HHS R01NS050266-03
6 · The paper itself

Abstract

Diversification of neuron classes is essential for functions of the olfactory system, but the underlying mechanisms that generate individual olfactory neuron types are only beginning to be understood. Here we describe a role of the highly conserved HMG-box transcription factor SOX-2 in postmitotic specification and alternative differentiation of the Caenorhabditis elegans AWC and AWB olfactory neurons. We show that SOX-2 partners with different transcription factors to diversify postmitotic olfactory cell types. SOX-2 functions cooperatively with the OTX/OTD transcription factor CEH-36 to specify an AWC "ground state," and functions with the LIM homeodomain factor LIM-4 to suppress this ground state and drive an AWB identity instead. Our findings provide novel insights into combinatorial codes that drive terminal differentiation programs in the nervous system and reveal a biological function of the deeply conserved Sox2 protein that goes beyond its well-known role in stem cell biology.

Indexed as

AnimalsBase SequenceCaenorhabditis elegansCaenorhabditis elegans ProteinsCell DifferentiationChlorocebus aethiopsChromosome MappingCOS CellsElectrophoretic Mobility Shift AssayGenomeHomeodomain ProteinsLIM-Homeodomain ProteinsLuciferasesMolecular Sequence DataOlfactory Receptor NeuronsPlasmidsCaenorhabditis elegans Proteinsceh-36 protein, C elegansHomeodomain ProteinsLim-4 protein, C elegansLIM-Homeodomain ProteinsLuciferasesSOXB1 Transcription FactorsTranscription FactorsC. eleganshomeodomainneuron differentiationsox‐2

Identifiers

PMID26341465
PMCPMC4609187
OpenAlexW2145931062

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.