Evidence map›Paper›PMID 26340423›Full record

ArticleMolecular cell2015

Architecture of the Human and Yeast General Transcription and DNA Repair Factor TFIIH.

Jie Luo, Peter Cimermancic, Shruthi Viswanath, Christopher C Ebmeier, Bong Kim, Marine Dehecq, Vishnu Raman, Charles H Greenberg, Riccardo Pellarin, Andrej Sali and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 98 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Jie LuoInstitute for Systems Biology, 401 Terry Avenue North, Seattle, WA 98109, USA.
Peter CimermancicDepartment of Bioengineering and Therapeutic Sciences, Department of Pharmaceutical Chemistry, California Institute for Quantitative Biomedical Sciences, University of California, San Francisco, San Francisco, CA 94158, USA.
Shruthi ViswanathDepartment of Bioengineering and Therapeutic Sciences, Department of Pharmaceutical Chemistry, California Institute for Quantitative Biomedical Sciences, University of California, San Francisco, San Francisco, CA 94158, USA.
Christopher C EbmeierDepartment of Chemistry and Biochemistry, University of Colorado, Boulder, CO 80303, USA.
Bong KimInstitute for Systems Biology, 401 Terry Avenue North, Seattle, WA 98109, USA.
Marine DehecqDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, PO Box 19024, Mailstop A1-162, Seattle, WA 98109, USA; Génétique des Interactions Macromoléculaires, Institut Pasteur, CNRS UMR3525, 25-28 rue du docteur Roux, 75015 Paris, France.
Vishnu RamanDepartment of Chemistry and Biochemistry, University of Colorado, Boulder, CO 80303, USA.
Charles H GreenbergDepartment of Bioengineering and Therapeutic Sciences, Department of Pharmaceutical Chemistry, California Institute for Quantitative Biomedical Sciences, University of California, San Francisco, San Francisco, CA 94158, USA.
Riccardo PellarinDepartment of Bioengineering and Therapeutic Sciences, Department of Pharmaceutical Chemistry, California Institute for Quantitative Biomedical Sciences, University of California, San Francisco, San Francisco, CA 94158, USA.
Andrej SaliDepartment of Bioengineering and Therapeutic Sciences, Department of Pharmaceutical Chemistry, California Institute for Quantitative Biomedical Sciences, University of California, San Francisco, San Francisco, CA 94158, USA.
Dylan J TaatjesDepartment of Chemistry and Biochemistry, University of Colorado, Boulder, CO 80303, USA.
Steven HahnDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, PO Box 19024, Mailstop A1-162, Seattle, WA 98109, USA.
Jeff RanishInstitute for Systems Biology, 401 Terry Avenue North, Seattle, WA 98109, USA. Electronic address: jranish@systemsbiology.org.
QB3 · USNorth Seattle College · USUniversity of Colorado Boulder · USCentre National de la Recherche Scientifique · FRFred Hutch Cancer Center · US

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Marian Esvelt · 1985 to 2026
$296.4M
Quantitative Systems BiologyP50GM076547 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI BALIGA, NITIN S · 2006 to 2016
$30.6M
TR&D Project 4. The Imaging Stage: Multiscale Spatiotemporal Modeling of Macromolecular Systems in Cellular NeighborhoodsP41GM109824 · NIGMS · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2014 to 2023
$18.8M
MOLECULAR ANALYSIS OF RNAPIII TRANSCRIPTION INITIATIONR01GM053451 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI HAHN, STEVEN M · 1995 to 2020
$11.4M
STRUCTURAL BIOLOGY TRAINING PROGRAMT32GM008284 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KORTEMME, TANJA · 1988 to 2022
$10.1M
BMI Bioinformatics Training GrantsT32GM067547 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HERNANDEZ, RYAN D. · 2003 to 2022
$6.6M
IMP: Software for Hybrid Determination of Macromolecular Assembly StructuresR01GM083960 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SALI, ANDREJ · 2008 to 2024
$5.2M
Integrative Program in Complex Biological System (ipCBS)T32EB009383 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MARSHALL, WALLACE, WEINER, ORION D · 2009 to 2022
$3.2M
Mapping the Dynamic Architecture of the Human Mediator ComplexR21CA175849 · NCI · INSTITUTE FOR SYSTEMS BIOLOGY · PI RANISH, JEFFREY A, TAATJES, DYLAN J · 2013 to 2014
$385k
Howard Hughes Medical InstituteNCI NIH HHS P30 CA015704NCI NIH HHS R21 CA175849NCI NIH HHS R21CA175849NIBIB NIH HHS T32 EB009383NIGMS NIH HHS GM053451NIGMS NIH HHS P41 GM109824NIGMS NIH HHS P50 GM076547NIGMS NIH HHS R01 GM053451NIGMS NIH HHS R01 GM083960NIGMS NIH HHS T32 GM008284NIGMS NIH HHS T32 GM067547
6 · The paper itself

Abstract

TFIIH is essential for both RNA polymerase II transcription and DNA repair, and mutations in TFIIH can result in human disease. Here, we determine the molecular architecture of human and yeast TFIIH by an integrative approach using chemical crosslinking/mass spectrometry (CXMS) data, biochemical analyses, and previously published electron microscopy maps. We identified four new conserved "topological regions" that function as hubs for TFIIH assembly and more than 35 conserved topological features within TFIIH, illuminating a network of interactions involved in TFIIH assembly and regulation of its activities. We show that one of these conserved regions, the p62/Tfb1 Anchor region, directly interacts with the DNA helicase subunit XPD/Rad3 in native TFIIH and is required for the integrity and function of TFIIH. We also reveal the structural basis for defects in patients with xeroderma pigmentosum and trichothiodystrophy, with mutations found at the interface between the p62 Anchor region and the XPD subunit.

Indexed as

Cross-Linking ReagentsDNA HelicasesDNA RepairHumansMass SpectrometryModels, MolecularMutationProtein Interaction Domains and MotifsProtein SubunitsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription Factors, TFIITranscription Factor TFIIHTranscription, GeneticXeroderma PigmentosumXeroderma Pigmentosum Group D ProteinCross-Linking ReagentsDNA HelicasesERCC2 protein, humanProtein SubunitsRad3 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsTFB1 protein, S cerevisiaeTranscription Factors, TFIITranscription Factor TFIIHXeroderma Pigmentosum Group D Protein

Identifiers

PMID26340423
PMCPMC4560838
OpenAlexW1760811090

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.