Evidence map›Paper›PMID 26338189›Full record

ArticleGenome biology and evolution2015

Genomic Analysis of an Ascomycete Fungus from the Rice Planthopper Reveals How It Adapts to an Endosymbiotic Lifestyle.

Hai-Wei Fan, Hiroaki Noda, Hong-Qing Xie, Yoshitaka Suetsugu, Qian-Hua Zhu, Chuan-Xi Zhang

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
5.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
  2. Review
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  8. Article
  9. Symbionts inApplied and environmental microbiology · 2023
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  10. Plants target gut microbes to reduce insect herbivore damage.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. Article
  12. Sakuranetin protects rice from brown planthopper attack by depleting its beneficial endosymbionts.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Biology · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Hai-Wei FanState Key Laboratory of Rice Biology and Ministry of Agriculture Key Laboratory of Agricultural Entomology, Institute of Insect Science, Zhejiang University, Hangzhou, China.
Hiroaki NodaNational Institute of Agrobiological Sciences, Tsukuba, Japan.
Hong-Qing XieBGI-Shenzhen, Shenzhen, Guangdong, China.
Yoshitaka SuetsuguNational Institute of Agrobiological Sciences, Tsukuba, Japan.
Qian-Hua ZhuBGI-Shenzhen, Shenzhen, Guangdong, China.
Chuan-Xi ZhangState Key Laboratory of Rice Biology and Ministry of Agriculture Key Laboratory of Agricultural Entomology, Institute of Insect Science, Zhejiang University, Hangzhou, China chxzhang@zju.edu.cn.
BGI Group (China) · CNInstitute of Agrobiological Sciences · JPZhejiang University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A number of sap-sucking insects harbor endosymbionts, which are thought to play an important role in the development of their hosts. One of the most important rice pests, the brown planthopper (BPH), Nilaparvata lugens (Stål), harbors an obligatory yeast-like symbiont (YLS) that cannot be cultured in vitro. Genomic information on this YLS would be useful to better understand its evolution. In this study, we performed genome sequencing of the YLS using both 454 and Illumina approaches, generating a draft genome that shows a slightly smaller genome size and relatively higher GC content than most ascomycete fungi. A phylogenomic analysis of the YLS supported its close relationship with insect pathogens. We analyzed YLS-specific genes and the categories of genes that are likely to have changed in the YLS during its evolution. The loss of mating type locus demonstrated in the YLS sheds light on the evolution of eukaryotic symbionts. This information about the YLS genome provides a helpful guide for further understanding endosymbiotic associations in hemiptera and the symbiotic replacement of ancient bacteria with a multifunctional YLS seems to have been a successful change.

Indexed as

Evolution, MolecularGenome, FungalAdaptation, BiologicalAnimalsAscomycotaGenes, FungalGenomicsHemipteraPhylogenySymbiosisAscomyceteendosymbiosisEntomomyces delphacidicolaevolutionNilaparvata lugensyeast-like symbiont

Identifiers

PMID26338189
PMCPMC4607526
OpenAlexW2116317123

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.