Evidence map›Paper›PMID 26337947›Full record

ArticlemAbs2015

Stability engineering of anti-EGFR scFv antibodies by rational design of a lambda-to-kappa swap of the VL framework using a structure-guided approach.

Andreas Lehmann, Josephine H F Wixted, Maxim V Shapovalov, Heinrich Roder, Roland L Dunbrack, Matthew K Robinson

Abstract read
In one paragraph

Article in mAbs, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. How can we discover developable antibody-based biotherapeutics?Frontiers in molecular biosciences · 2023
    Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Toward Drug-Like Multispecific Antibodies by Design.International journal of molecular sciences · 2020
    Review
  13. Review
  14. Expanding the Boundaries of Biotherapeutics with Bispecific Antibodies.BioDrugs : clinical immunotherapeutics, biopharmaceuticals and gene therapy · 2018
    Review
  15. Article
  16. Article
  17. The impact of structural biology in medicine illustrated with four case studies.Journal of molecular medicine (Berlin, Germany) · 2018
    Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Andreas Lehmanna Molecular Therapeutics Program, Fox Chase Cancer Center , Philadelphia , PA.
Josephine H F Wixteda Molecular Therapeutics Program, Fox Chase Cancer Center , Philadelphia , PA.
Maxim V Shapovalova Molecular Therapeutics Program, Fox Chase Cancer Center , Philadelphia , PA.
Heinrich Rodera Molecular Therapeutics Program, Fox Chase Cancer Center , Philadelphia , PA.
Roland L Dunbracka Molecular Therapeutics Program, Fox Chase Cancer Center , Philadelphia , PA.
Matthew K Robinsona Molecular Therapeutics Program, Fox Chase Cancer Center , Philadelphia , PA.

Funding

WORD PROCESSING CENTER--COREP30CA006927 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI Dietmar J Kappes · 1985 to 2026
$138.8M
TRAINING PROGRAM IN CANCER RESEARCHT32CA009035 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI CHERNOFF, JONATHAN · 1985 to 2020
$10.5M
Bayesian Statistics and Algorithms for Homology ModelingR01GM084453 · NIGMS · RESEARCH INST OF FOX CHASE CAN CTR · PI DUNBRACK, ROLAND L · 2008 to 2016
$2.6M
Development of methods for antibody computational designR01GM111819 · NIGMS · RESEARCH INST OF FOX CHASE CAN CTR · PI DUNBRACK, ROLAND L · 2015 to 2016
$700k
Selective Delivery of Monomethyl Auristatin Derivatives to Prostate Tumors UsingR21CA181868 · NCI · LEHIGH UNIVERSITY · PI ROBINSON, MATTHEW K, THEVENIN, DAMIEN · 2014 to 2015
$421k
NCI NIH HHS CA06927NCI NIH HHS R21 CA181868NCI NIH HHS T32 CA009035NIGMS NIH HHS R01 GM084453NIGMS NIH HHS R01 GM111819
6 · The paper itself

Abstract

Phage-display technology facilitates rapid selection of antigen-specific single-chain variable fragment (scFv) antibodies from large recombinant libraries. ScFv antibodies, composed of a VH and VL domain, are readily engineered into multimeric formats for the development of diagnostics and targeted therapies. However, the recombinant nature of the selection strategy can result in VH and VL domains with sub-optimal biophysical properties, such as reduced thermodynamic stability and enhanced aggregation propensity, which lead to poor production and limited application. We found that the C10 anti-epidermal growth factor receptor (EGFR) scFv, and its affinity mutant, P2224, exhibit weak production from E. coli. Interestingly, these scFv contain a fusion of lambda3 and lambda1 V-region (LV3 and LV1) genes, most likely the result of a PCR aberration during library construction. To enhance the biophysical properties of these scFvs, we utilized a structure-based approach to replace and redesign the pre-existing framework of the VL domain to one that best pairs with the existing VH. We describe a method to exchange lambda sequences with a more stable kappa3 framework (KV3) within the VL domain that incorporates the original lambda DE-loop. The resulting scFvs, C10KV3_LV1DE and P2224KV3_LV1DE, are more thermodynamically stable and easier to produce from bacterial culture. Additionally, C10KV3_LV1DE and P2224KV3_LV1DE retain binding affinity to EGFR, suggesting that such a dramatic framework swap does not significantly affect scFv binding. We provide here a novel strategy for redesigning the light chain of problematic scFvs to enhance their stability and therapeutic applicability.

Indexed as

Drug DesignAmino Acid SequenceAntibody AffinityErbB ReceptorsHumansImmunoglobulin kappa-ChainsImmunoglobulin lambda-ChainsImmunoglobulin Light ChainsModels, MolecularMolecular Sequence DataMutationPeptide LibraryProtein ConformationProtein EngineeringSequence Homology, Amino AcidSingle-Chain AntibodiesEGFR protein, humanErbB ReceptorsImmunoglobulin kappa-ChainsImmunoglobulin lambda-ChainsImmunoglobulin Light ChainsPeptide LibrarySingle-Chain Antibodiesantibody engineeringEGFRscFv antibodystability engineeringthermostability

Identifiers

PMID26337947
PMCPMC4966335

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.