Evidence map›Paper›PMID 26337638›Full record

SynthesisJournal of medical genetics2015

Genome-wide association meta-analyses to identify common genetic variants associated with hallux valgus in Caucasian and African Americans.

Yi-Hsiang Hsu, Youfang Liu, Marian T Hannan, William Maixner, Shad B Smith, Luda Diatchenko, Yvonne M Golightly, Hylton B Menz, Virginia B Kraus, Michael Doherty and 2 more

Open access · greenAbstract readMeta-Analysis
In one paragraph

Synthesis in Journal of medical genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 2 pooled it
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 2 syntheses or guidelines pooled it, 22 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Review
  5. Article
  6. Observational
  7. Article
  8. Review
  9. Article
  10. New insights into hallux valgus by whole exome sequencing study.Experimental biology and medicine (Maywood, N.J.) · 2021
    Article
  11. Article
  12. Article
  13. Article
  14. Epidemiology of Shoe Wearing Patterns Over Time in Older Women: Associations With Foot Pain and Hallux Valgus.The journals of gerontology. Series A, Biological sciences and medical sciences · 2016
    Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 4 countries.

Yi-Hsiang HsuHebrew SeniorLife Institute for Aging Research and Harvard Medical School, Boston, Massachusetts, USA Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA Molecular and Integrative Physiological Sciences, Harvard School of Public Health, Boston, Massachusetts, USA Beth Israel Deaconess Medical Center, Boston, Massachusetts, USA.
Youfang LiuThurston Arthritis Research Center, University of North Carolina, Chapel Hill, North Carolina, USA.
Marian T HannanHebrew SeniorLife Institute for Aging Research and Harvard Medical School, Boston, Massachusetts, USA Beth Israel Deaconess Medical Center, Boston, Massachusetts, USA.
William MaixnerCenter for Pain Research and Innovation, University of North Carolina School of Dentistry, Chapel Hill, North Carolina, USA.
Shad B SmithCenter for Pain Research and Innovation, University of North Carolina School of Dentistry, Chapel Hill, North Carolina, USA.
Luda DiatchenkoCenter for Pain Research and Innovation, University of North Carolina School of Dentistry, Chapel Hill, North Carolina, USA Alan Edwards Center for Research on Pain, McGill University, Montreal, Quebec, Canada.
Yvonne M GolightlyThurston Arthritis Research Center, University of North Carolina, Chapel Hill, North Carolina, USA Department of Epidemiology, University of North Carolina, Chapel Hill, North Carolina, USA Injury Prevention Research Center, University of North Carolina, Chapel Hill, North Carolina, USA.
Hylton B MenzLower Extremity and Gait Studies Program, La Trobe University, Bundoora, Australia.
Virginia B KrausDepartment of Medicine, The Duke Molecular Physiology Institute, Duke University School of Medicine, Durham, North Carolina, USA.
Michael DohertyDepartment of Academic Rheumatology, University of Nottingham, Nottingham, UK.
A G WilsonDepartment of Infection and Immunity, The University of Sheffield Medical School, UK.
Joanne M JordanThurston Arthritis Research Center, University of North Carolina, Chapel Hill, North Carolina, USA Department of Epidemiology, University of North Carolina, Chapel Hill, North Carolina, USA Department of Medicine, University of North Carolina, Chapel Hill, North Carolina, USA Department of Orthopedics, University of North Carolina, Chapel Hill, North Carolina, USA.
University of North Carolina at Chapel Hill · USHebrew SeniorLife · USDuke University · USLa Trobe University · AUUniversity of Nottingham · GBUniversity of Sheffield · GB

Funding

UNC-CH CENTER FOR ENVIRONMENTAL HEALTH &SUSCEPTIBILITYP30ES010126 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Stephanie Engel · 2001 to 2026
$36.3M
Project 3P60AR049465 · NIAMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI JORDAN, JOANNE M. · 2003 to 2008
$6.0M
NIAMS Multidisciplinary Clinical Research CenterP60AR064166 · NIAMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI CALLAHAN, LEIGH FLEMING · 2013 to 2017
$5.8M
Foot Disorders, Pain and Physical Disability in EldersR01AR047853 · NIAMS · HEBREW REHABILITATION CENTER FOR AGED · PI HANNAN, MARIAN T. · 2002 to 2012
$5.1M
UNC Clinical Translation Science Award-K12 Scholars Program (KL2)KL2TR000084 · NCATS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI RUNGE, MARSCHALL S. · 2012 to 2013
$2.3M
Genetics of Foot DisordersR01AR060492 · NIAMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HANNAN, MARIAN T., JORDAN, JOANNE M. · 2010 to 2012
$1.9M
Women's knee motion patterns in functional activitiesP60AR030701 · NIAMS · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI WINFIELD, JOHN B · 1986 to 2001
$1.9M
Biomedical Researcher Development Program in TMJD and Orofacial PainK12DE022793 · NIDCR · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LIM, PEI FENG, MAIXNER, WILLIAM · 2012 to 2016
$1.3M
THE FRAMINGHAM HEART STUDY-N01HC25195-268025195-268025195N01HC025195 · HC · TRUSTEES OF BOSTON UNIVERSITY · PI WOLF, PHILIP A · 2002 to 2006
–
NCATS NIH HHS KL2 TR000084NHLBI NIH HHS N01 HC025195NHLBI NIH HHS N01-HC-25195NIAMS NIH HHS 5-P60-AR30701NIAMS NIH HHS 5 P60 AR49465NIAMS NIH HHS AR047853NIAMS NIH HHS AR060492NIAMS NIH HHS P60 AR030701NIAMS NIH HHS P60 AR049465NIAMS NIH HHS P60 AR064166NIAMS NIH HHS P60-AR064166NIAMS NIH HHS R01 AR047853NIAMS NIH HHS R01 AR060492NIDCR NIH HHS K12 DE022793NIEHS NIH HHS P30 ES010126
6 · The paper itself

Abstract

objectiveHallux valgus (HV) affects ∼36% of Caucasian adults. Although considered highly heritable, the underlying genetic determinants are unclear. We conducted the first genome-wide association study (GWAS) aimed to identify genetic variants associated with HV.

methodsHV was assessed in three Caucasian cohorts (n=2263, n=915 and n=1231 participants, respectively). In each cohort, a GWAS was conducted using 2.5 M imputed SNPs. Mixed-effect regression with the additive genetic model adjusted for age, sex, weight and within-family correlations was used for both sex-specific and combined analyses. To combine GWAS results across cohorts, fixed-effect inverse-variance meta-analyses were used. Following meta-analyses, top-associated findings were also examined in an African American cohort (n=327).

resultsThe proportion of HV variance explained by genome-wide genotyped SNPs was 50% in men and 48% in women. A higher proportion of genetic determinants of HV were sex specific. The most significantly associated SNP in men was rs9675316 located on chr17q23-a24 near the AXIN2 gene (p=0.000000546×10(-7)); the most significantly associated SNP in women was rs7996797 located on chr13q14.1-q14.2 near the ESD gene (p=0.000000721×10(-7)). Genome-wide significant SNP-by-sex interaction was found for SNP rs1563374 located on chr11p15.1 near the MRGPRX3 gene (interaction p value =0.0000000041×10(-9)). The association signals diminished when combining men and women.

conclusionsThe findings suggest that the potential pathophysiological mechanisms of HV are complex and strongly underlined by sex-specific interactions. The identified genetic variants imply contribution of biological pathways observed in osteoarthritis as well as new pathways, influencing skeletal development and inflammation.

Indexed as

Polymorphism, Single NucleotideAgedAged, 80 and overAxin ProteinBlack or African AmericanCarboxylesteraseFemaleGenetic Predisposition to DiseaseGenome-Wide Association StudyHallux ValgusHumansMaleMiddle AgedReceptors, G-Protein-CoupledSex FactorsWhite PeopleAXIN2 protein, humanAxin ProteinCarboxylesteraseESD protein, humanMRGPRX3 protein, humanReceptors, G-Protein-Coupledcandidate genesgenetic variantsGWAShallux valgus

Identifiers

PMID26337638
PMCPMC4864963
OpenAlexW2232572465

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.