Evidence map›Paper›PMID 26337387›Full record

ArticleMolecular biology of the cell2015

Dendritic spine geometry can localize GTPase signaling in neurons.

Samuel A Ramirez, Sridhar Raghavachari, Daniel J Lew

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Sensing the shape of a cell with reaction diffusion and energy minimization.Proceedings of the National Academy of Sciences of the United States of America · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Samuel A RamirezProgram in Computational Biology and Bioinformatics, Duke University Medical Center, Durham, NC 27710 Department of Pharmacology and Cancer Biology, Duke University Medical Center, Durham, NC 27710 samurami@gmail.com.
Sridhar RaghavachariDepartment of Biology, University of Maryland, College Park, MD 20742.
Daniel J LewDepartment of Pharmacology and Cancer Biology, Duke University Medical Center, Durham, NC 27710.
Duke Medical Center · USDuke University · USUniversity of Maryland, College Park · US

Funding

POLARITY ESTABLISHMENT IN YEASTR01GM062300 · NIGMS · DUKE UNIVERSITY · PI LEW, DANIEL J · 2001 to 2016
$5.0M
Gradient Tracking and ChemotropismR01GM103870 · NIGMS · DUKE UNIVERSITY · PI ELSTON, TIMOTHY C, LEW, DANIEL J · 2013 to 2016
$1.8M
CRCNS: Receptor mobility and scaffold dynamics at single glutamatergic synapsesR01MH096376 · NIMH · DUKE UNIVERSITY · PI RAGHAVACHARI, SRIDHAR · 2011 to 2014
$1.3M
NIGMS NIH HHS GM62300NIGMS NIH HHS R01 GM062300NIGMS NIH HHS R01 GM103870NIMH NIH HHS MH96376NIMH NIH HHS R01 MH096376
6 · The paper itself

Abstract

Dendritic spines are the postsynaptic terminals of most excitatory synapses in the mammalian brain. Learning and memory are associated with long-lasting structural remodeling of dendritic spines through an actin-mediated process regulated by the Rho-family GTPases RhoA, Rac, and Cdc42. These GTPases undergo sustained activation after synaptic stimulation, but whereas Rho activity can spread from the stimulated spine, Cdc42 activity remains localized to the stimulated spine. Because Cdc42 itself diffuses rapidly in and out of the spine, the basis for the retention of Cdc42 activity in the stimulated spine long after synaptic stimulation has ceased is unclear. Here we model the spread of Cdc42 activation at dendritic spines by means of reaction-diffusion equations solved on spine-like geometries. Excitable behavior arising from positive feedback in Cdc42 activation leads to spreading waves of Cdc42 activity. However, because of the very narrow neck of the dendritic spine, wave propagation is halted through a phenomenon we term geometrical wave-pinning. We show that this can account for the localization of Cdc42 activity in the stimulated spine, and, of interest, retention is enhanced by high diffusivity of Cdc42. Our findings are broadly applicable to other instances of signaling in extreme geometries, including filopodia and primary cilia.

Indexed as

Models, NeurologicalActinscdc42 GTP-Binding ProteinComputer SimulationDendritic SpinesGTP PhosphohydrolasesHippocampusNeuronsSignal TransductionSynapsesActinscdc42 GTP-Binding ProteinGTP Phosphohydrolases

Identifiers

PMID26337387
PMCPMC4710246
OpenAlexW2221233020

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.