Evidence map›Paper›PMID 26337258›Full record

ArticleMolecular microbiology2015

Essentiality of threonylcarbamoyladenosine (t(6)A), a universal tRNA modification, in bacteria.

Patrick C Thiaville, Basma El Yacoubi, Caroline Köhrer, Jennifer J Thiaville, Chris Deutsch, Dirk Iwata-Reuyl, Jo Marie Bacusmo, Jean Armengaud, Yoshitaka Bessho, Collin Wetzel and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed, 94 citations in OpenAlex.

  1. Compendium of RNA modifications for bacterial stress adaptation.Microbiology and molecular biology reviews : MMBR · 2026
    Review
  2. Article
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  5. Catalytic and regulatory basis of tRNA tNature communications · 2026
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  8. Genetically Predicted tClinical, cosmetic and investigational dermatology · 2026
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  11. ThiF-Like Enzyme Chemistry in Primary and Secondary Metabolism.Chembiochem : a European journal of chemical biology · 2025
    Review
  12. Article
  13. Review
  14. Review
  15. Phase-Specific Antibiotic Resistance Mechanisms in anbioRxiv : the preprint server for biology · 2025
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Structural basis of tRNA recognition by the mNature structural & molecular biology · 2024
    Article

19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 4 countries.

Patrick C ThiavilleDepartment of Microbiology and Cell Science, University of Florida, Gainesville, FL, 32611, USA.
Basma El YacoubiDepartment of Microbiology and Cell Science, University of Florida, Gainesville, FL, 32611, USA.
Caroline KöhrerDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.
Jennifer J ThiavilleDepartment of Microbiology and Cell Science, University of Florida, Gainesville, FL, 32611, USA.
Chris DeutschDepartment of Chemistry, Portland State University, Portland, OR, 97297, USA.
Dirk Iwata-ReuylDepartment of Chemistry, Portland State University, Portland, OR, 97297, USA.
Jo Marie BacusmoDepartment of Microbiology and Cell Science, University of Florida, Gainesville, FL, 32611, USA.
Jean ArmengaudCEA, DSV, IBiTec-S, SPI, Li2D, Laboratory 'Innovative technologies for Detection and Diagnostics', Bagnols-sur-Cèze, F-30200, France.
Yoshitaka BesshoRIKEN SPring-8 Center, 1-1-1 Kouto, Sayo, Hyogo, 679-5148, Japan.
Collin WetzelRieveschl Laboratories for Mass Spectrometry, Department of Chemistry, University of Cincinnati, Cincinnati, Ohio, 45221, USA.
Xiaoyu CaoRieveschl Laboratories for Mass Spectrometry, Department of Chemistry, University of Cincinnati, Cincinnati, Ohio, 45221, USA.
Patrick A LimbachRieveschl Laboratories for Mass Spectrometry, Department of Chemistry, University of Cincinnati, Cincinnati, Ohio, 45221, USA.
Uttam L RajBhandaryDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.
Valérie de Crécy-LagardDepartment of Microbiology and Cell Science, University of Florida, Gainesville, FL, 32611, USA.
University of Florida · USUniversity of Cincinnati · USMassachusetts Institute of Technology · USPortland State University · USCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FRInstitute of Physics, Academia Sinica · TWUniversité Paris-Sud · FR

Funding

Training Program in Cancer TherapeuticsT32CA117846 · NCI · UNIVERSITY OF CINCINNATI · PI PRICE, CAROLYN M, TAKIAR, VINITA · 2006 to 2022
$6.5M
Synthesis and function of Queuosine in BacteriaR01GM070641 · NIGMS · UNIVERSITY OF FLORIDA · PI DE CRECY-LAGARD, VALERIE A · 2006 to 2023
$5.3M
STRUCTURE &FUNCTION OF TRANSFER RIBONUCLEIC ACIDSR01GM017151 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI RAJBHANDARY, UTTAM L · 1985 to 2015
$2.4M
Acquisition of an LC Mass Spectrometer for Nucleic Acids ResearchS10RR027671 · NCRR · UNIVERSITY OF CINCINNATI · PI LIMBACH, PATRICK A · 2010 to 2010
$500k
NCI NIH HHS T32 CA117846NCRR NIH HHS S10 RR027671NIGMS NIH HHS R01 GM017151NIGMS NIH HHS R01 GM070641NIGMS NIH HHS R01 GM17151NIGMS NIH HHS R01 GM70641
6 · The paper itself

Abstract

Threonylcarbamoyladenosine (t(6)A) is a modified nucleoside universally conserved in tRNAs in all three kingdoms of life. The recently discovered genes for t(6)A synthesis, including tsaC and tsaD, are essential in model prokaryotes but not essential in yeast. These genes had been identified as antibacterial targets even before their functions were known. However, the molecular basis for this prokaryotic-specific essentiality has remained a mystery. Here, we show that t(6)A is a strong positive determinant for aminoacylation of tRNA by bacterial-type but not by eukaryotic-type isoleucyl-tRNA synthetases and might also be a determinant for the essential enzyme tRNA(Ile)-lysidine synthetase. We confirm that t(6)A is essential in Escherichia coli and a survey of genome-wide essentiality studies shows that genes for t(6)A synthesis are essential in most prokaryotes. This essentiality phenotype is not universal in Bacteria as t(6)A is dispensable in Deinococcus radiodurans, Thermus thermophilus, Synechocystis PCC6803 and Streptococcus mutans. Proteomic analysis of t(6)A(-) D. radiodurans strains revealed an induction of the proteotoxic stress response and identified genes whose translation is most affected by the absence of t(6)A in tRNAs. Thus, although t(6)A is universally conserved in tRNAs, its role in translation might vary greatly between organisms.

Indexed as

AdenosineAmino Acid SequenceAminoacylationAmino Acyl-tRNA SynthetasesConserved SequenceDeinococcusEscherichia coliMolecular Sequence DataProkaryotic CellsProteomicsRNA, BacterialRNA, TransferSaccharomyces cerevisiaeAdenosineAmino Acyl-tRNA SynthetasesN(6)-(N-threonylcarbonyl)adenosineRNA, BacterialRNA, Transfer

Identifiers

PMID26337258
PMCPMC4963248
OpenAlexW1891952729

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.