ReviewCurrent opinion in microbiology2015
High-throughput bacterial functional genomics in the sequencing era.
Review in Current opinion in microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
22 citing papers in PubMed.
- Approaches to dissect the vitamin biosynthetic network of the gut microbiota.Microbiome research reports · 2025Review
- Important soil microbiota's effects on plants and soils: a comprehensive 30-year systematic literature review.Frontiers in microbiology · 2024Review
- Dynamic Transcriptional Landscape ofInternational journal of molecular sciences · 2023Article
- High-throughput functional genomics: A (myco)bacterial perspective.Molecular microbiology · 2023Review
- Flow-cytometric cell sorting coupled with UV mutagenesis for improving pectin lyase expression.Frontiers in bioengineering and biotechnology · 2023Article
- LI-Detector: a Method for Curating Ordered Gene-Replacement Libraries.Microbiology spectrum · 2022Article
- High-throughput functional variant screens via in vivo production of single-stranded DNA.Proceedings of the National Academy of Sciences of the United States of America · 2021Article
- Functional genetics of human gut commensal Bacteroides thetaiotaomicron reveals metabolic requirements for growth across environments.Cell reports · 2021Article
- Fundamental differences in physiology ofMicrobial genomics · 2020Article
- An integrated model system to gain mechanistic insights into biofilm-associated antimicrobial resistance in Pseudomonas aeruginosa MPAO1.NPJ biofilms and microbiomes · 2020Article
- A Bayesian non-parametric mixed-effects model of microbial growth curves.PLoS computational biology · 2020Article
- Biochemistry, genetics and biotechnology of glycerol utilization in Pseudomonas species.Microbial biotechnology · 2020Review
- In vivo insertion pool sequencing identifies virulence factors in a complex fungal-host interaction.PLoS biology · 2018Article
- High-throughput interaction screens illuminate the role of c-di-AMP in cyanobacterial nighttime survival.PLoS genetics · 2018Article
- Chemical genetics in drug discovery.Current opinion in systems biology · 2017Review
- Construction and Analysis of Two Genome-Scale Deletion Libraries for Bacillus subtilis.Cell systems · 2017Article
- A tool named Iris for versatile high-throughput phenotyping in microorganisms.Nature microbiology · 2017Article
- Review
- Molecular phenotyping of infection-associated small non-coding RNAs.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2016Review
- The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries.Bioinformatics (Oxford, England) · 2016Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors.
Funding
Abstract
High-throughput functional genomic technologies are accelerating progress in understanding the diversity of bacterial life and in developing a systems-level understanding of model bacterial organisms. Here we highlight progress in deep-sequencing-based functional genomics, show how whole genome sequencing is enabling phenotyping in organisms recalcitrant to genetic approaches, recount the rapid proliferation of functional genomic approaches to non-growth phenotypes, and discuss how advances are enabling genome-scale resource libraries for many different bacteria.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.