Evidence map›Paper›PMID 26335661›Full record

ArticleJournal of pharmacokinetics and pharmacodynamics2015

Prediction and validation of enzyme and transporter off-targets for metformin.

Sook Wah Yee, Lawrence Lin, Matthew Merski, Michael J Keiser, Aakash Gupta, Youcai Zhang, Huan-Chieh Chien, Brian K Shoichet, Kathleen M Giacomini

Open access · greenAbstract read
In one paragraph

Article in Journal of pharmacokinetics and pharmacodynamics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 1 pooled it
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 1 synthesis or guideline pooled it, 47 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. Article
  5. Review
  6. The Gut Microbiota-Related Antihyperglycemic Effect of Metformin.Pharmaceuticals (Basel, Switzerland) · 2025
    Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. The Hormetic Effect of Metformin: "Less Is More"?International journal of molecular sciences · 2021
    Review
  12. Review
  13. Review
  14. Validation strategies for target prediction methods.Briefings in bioinformatics · 2020
    Review
  15. Review
  16. Article
  17. Article
  18. Observational
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Sook Wah YeeDepartment of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, 94158-2911, USA.
Lawrence LinDepartment of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, 94158-2911, USA.
Matthew MerskiDepartment of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, CA, 94158-2550, USA.
Michael J KeiserDepartment of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, 94158-2911, USA.
Aakash GuptaDepartment of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, 94158-2911, USA.
Youcai ZhangDepartment of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, 94158-2911, USA.
Huan-Chieh ChienDepartment of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, 94158-2911, USA.
Brian K ShoichetDepartment of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, CA, 94158-2550, USA.
Kathleen M GiacominiDepartment of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, 94158-2911, USA. kathy.giacomini@ucsf.edu.
University of California, San Francisco · USInstitute for Neurodegenerative Disorders · US

Funding

UCSF Liver Core CenterP30DK026743 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Holger Willenbring · 1986 to 2026
$30.7M
Research BaseP30DK063720 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KRUMMEL, MATTHEW F · 2003 to 2019
$21.8M
Pharmacogenomics of Membrane TransportersU19GM061390 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WITTE, JOHN S. · 2010 to 2014
$16.3M
PHARMACEUTICAL SCIENCES AND PHARMACOGENOMICST32GM007175 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI AHITUV, NADAV, KROETZ, DEANNA L · 1985 to 2021
$7.1M
A Web-Based Automatic Virtual Screening SystemR01GM071896 · NIGMS · UNIVERSITY OF TORONTO · PI IRWIN, JOHN J. · 2004 to 2024
$6.0M
A platform to predict side-effect targets for drugsR44GM093456 · NIGMS · SEACHANGE PHARMACEUTICALS, INC. · PI HODGE, CARL NICHOLAS, KEISER, MICHAEL JAMES · 2013 to 2014
$910k
NIDDK NIH HHS P30 DK026743NIDDK NIH HHS P30 DK063720NIGMS NIH HHS GM71896NIGMS NIH HHS R01 GM071896NIGMS NIH HHS R44 GM093456NIGMS NIH HHS R44GM093456NIGMS NIH HHS T32 GM007175NIGMS NIH HHS U19 GM061390NIGMS NIH HHS U19-GM61390
6 · The paper itself

Abstract

Metformin, an established first-line treatment for patients with type 2 diabetes, has been associated with gastrointestinal (GI) adverse effects that limit its use. Histamine and serotonin have potent effects on the GI tract. The effects of metformin on histamine and serotonin uptake were evaluated in cell lines overexpressing several amine transporters (OCT1, OCT3 and SERT). Metformin inhibited histamine and serotonin uptake by OCT1, OCT3 and SERT in a dose-dependent manner, with OCT1-mediated amine uptake being most potently inhibited (IC50 = 1.5 mM). A chemoinformatics-based method known as Similarity Ensemble Approach predicted diamine oxidase (DAO) as an additional intestinal target of metformin, with an E-value of 7.4 × 10(-5). Inhibition of DAO was experimentally validated using a spectrophotometric assay with putrescine as the substrate. The Ki of metformin for DAO was measured to be 8.6 ± 3.1 mM. In this study, we found that metformin inhibited intestinal amine transporters and DAO at concentrations that may be achieved in the intestine after therapeutic doses. Further studies are warranted to determine the relevance of these interactions to the adverse effects of metformin on the gastrointestinal tract.

Indexed as

Amine Oxidase (Copper-Containing)Biological TransportCell LineDiabetes Mellitus, Type 2HEK293 CellsHumansIntestinal MucosaKineticsMembrane Transport ProteinsMetforminOctamer Transcription Factor-3Organic Cation Transporter 1Serotonin Plasma Membrane Transport ProteinsAmine Oxidase (Copper-Containing)Membrane Transport ProteinsMetforminOctamer Transcription Factor-3Organic Cation Transporter 1POU5F1 protein, humanSerotonin Plasma Membrane Transport ProteinsSLC6A4 protein, humanDiamine oxidaseHistamineMetforminOrganic cation transporterPutrescineSerotonin

Identifiers

PMID26335661
PMCPMC4656030
OpenAlexW1208265978

What OpenQuestion holds

Texttitle and abstract
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.