Evidence map›Paper›PMID 26334652›Full record

ArticleCancer science2015

Deregulation of SYCP2 predicts early stage human papillomavirus-positive oropharyngeal carcinoma: A prospective whole transcriptome analysis.

Liam Masterson, Frederic Sorgeloos, David Winder, Matt Lechner, Alison Marker, Shalini Malhotra, Holger Sudhoff, Piyush Jani, Peter Goon, Jane Sterling

Open access · goldAbstract read
In one paragraph

Article in Cancer science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 3 pooled it
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 3 syntheses or guidelines pooled it, 54 citations in OpenAlex.

  1. Pooled it
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  14. Increased expression ofFrontiers in genetics · 2022
    Article
  15. Review
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  17. Article
  18. AKR1C3 is a biomarker and druggable target for oropharyngeal tumors.Cellular oncology (Dordrecht, Netherlands) · 2021
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Liam MastersonDepartment of Pathology, University of Cambridge, Cambridge, UK.
Frederic SorgeloosDepartment of Pathology, University of Cambridge, Cambridge, UK.
David WinderDepartment of Pathology, University of Cambridge, Cambridge, UK.
Matt LechnerUniversity College London Cancer Institute, London, UK.
Alison MarkerDepartment of Histopathology, Cambridge University Hospitals National Health Service Foundation Trust, Cambridge, UK.
Shalini MalhotraDepartment of Histopathology, Cambridge University Hospitals National Health Service Foundation Trust, Cambridge, UK.
Holger SudhoffDepartment of Otolaryngology, Head and Neck Surgery, Bielefeld Academic Teaching Hospital, Bielefeld, Germany.
Piyush JaniDepartment of Otorhinolaryngology, Cambridge University Hospitals National Health Service Foundation Trust, Cambridge, UK.
Peter GoonDepartment of Pathology, University of Cambridge, Cambridge, UK.
Jane SterlingDepartment of Pathology, University of Cambridge, Cambridge, UK.
University of Cambridge · GBCambridge University Hospitals NHS Foundation Trust · GBNational Health Service · GBKlinikum Bielefeld · DEUniversity College London · GB

Funding

Cancer Research UK A62
6 · The paper itself

Abstract

This study was designed to identify significant differences in gene expression profiles of human papillomavirus (HPV)-positive and HPV-negative oropharyngeal squamous cell carcinomas (OPSCC) and to better understand the functional and biological effects of HPV infection in the premalignant pathway. Twenty-four consecutive patients with locally advanced primary OPSCC were included in a prospective clinical trial. Fresh tissue samples (tumor vs. matched normal epithelium) were subjected to whole transcriptome analysis and the results validated on the same cohort with RT-quantitative real-time PCR. In a separate retrospective cohort of 27 OPSCC patients, laser capture microdissection of formalin-fixed, paraffin-embedded tissue allowed RNA extraction from adjacent regions of normal epithelium, carcinoma in situ (premalignant) and invasive SCC tissue. The majority of patients showed evidence of high-risk HPV16 positivity (80.4%). Predictable fold changes of RNA expression in HPV-associated disease included multiple transcripts within the p53 oncogenic pathway (e.g. CDKN2A/CCND1). Other candidate transcripts found to have altered levels of expression in this study have not previously been established (SFRP1, CRCT1, DLG2, SYCP2, and CRNN). Of these, SYCP2 showed the most consistent fold change from baseline in premalignant tissue; aberrant expression of this protein may contribute to genetic instability during HPV-associated cancer development. If further corroborated, this data may contribute to the development of a non-invasive screening tool. This study is registered with the UK Clinical Research Network (ref.: 11945).

Indexed as

AdultArea Under CurveBiomarkers, TumorCell Cycle ProteinsDNA-Binding ProteinsFemaleGene Expression ProfilingHumansImmunohistochemistryIn Situ HybridizationKaplan-Meier EstimateLaser Capture MicrodissectionMaleMolecular Sequence DataOropharyngeal NeoplasmsPapillomavirus InfectionsBiomarkers, TumorCell Cycle ProteinsDNA-Binding ProteinsSYCP2 protein, humanDiagnosis by tumor markers and biomarkershuman papillomavirusmRNA expression analysisoropharyngeal carcinomaRb/p16-related genes

Identifiers

PMID26334652
PMCPMC4714680
OpenAlexW2101440362

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.