ArticleMolecular genetics and genomics : MGG2016
Genetic analysis for rice grain quality traits in the YVB stable variant line using RAD-seq.
Article in Molecular genetics and genomics : MGG, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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21 citing papers in PubMed, 40 citations in OpenAlex.
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- Sequencing and Genomic Analysis of Sorghum DNA Introgression Variant Line R21 and Recipient Rice Jin Hui 1 Revealed Repetitive Element Variation.International journal of molecular sciences · 2022Article
- Identification of Novel Genomic Regions for Bacterial Leaf Pustule (BLP) Resistance in Soybean (International journal of molecular sciences · 2022Article
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- Dissection of the Genetic Basis of Yield-Related Traits in the Chinese Peanut Mini-Core Collection Through Genome-Wide Association Studies.Frontiers in plant science · 2021Article
- Spike-Stalk Injection Method Causes Extensive Phenotypic and Genotypic Variations for Rice Germplasm.Frontiers in plant science · 2020Article
- Microbial-assisted and genomic-assisted breeding: a two way approach for the improvement of nutritional quality traits in agricultural crops.3 Biotech · 2020Review
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- Whole-genome mapping identified novel "QTL hotspots regions" for seed storability in soybean (Glycine max L.).BMC genomics · 2019Article
- Genome-Wide Detection of Major and Epistatic Effect QTLs for Seed Protein and Oil Content in Soybean Under Multiple Environments Using High-Density Bin Map.International journal of molecular sciences · 2019Article
- Acid phosphatase gene GmHAD1 linked to low phosphorus tolerance in soybean, through fine mapping.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018Article
- Fine-mapping of QTLs for individual and total isoflavone content in soybean (Glycine max L.) using a high-density genetic map.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018Article
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- Development of a High-Density Genetic Map Based on Specific Length Amplified Fragment Sequencing and Its Application in Quantitative Trait Loci Analysis for Yield-Related Traits in Cultivated Peanut.Frontiers in plant science · 2018Article
- Detecting the QTL-allele system conferring flowering date in a nested association mapping population of soybean using a novel procedure.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- Insight into MAS: A Molecular Tool for Development of Stress Resistant and Quality of Rice through Gene Stacking.Frontiers in plant science · 2017Review
- Genetic mapping of yield traits using RIL population derived from Fuchuan Dahuasheng and ICG6375 of peanut (Molecular breeding : new strategies in plant improvement · 2017Article
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Authors and funding
14 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The future of rice breeding will likely be built on the basis of the further utilization of heterosis between elite cultivars and genetic resources from distant subspecies of rice. Previous studies have proved that exogenous genomic DNA transformation methods can be used to transfer genetic information from distant relatives (donor) into cultivated rice (recipient). However, the mechanism underlying this form of genetic transfer is poorly characterized, and the genes that cause the phenotypic changes in these variants are typically difficult to identify. This study examined YVB, a stable variant line with greatly improved grain quality traits that was derived from an indica variety (V20B) by transferring genomic DNA of O.minuta through the "spike-stalk injection method (SIM)". We used restriction-site associated DNA sequencing technology (RAD-seq) to evaluate a population of BC1F5 backcross lines (YVB × V20B); the RAD-seq data were used to construct a genetic linkage map with high-density SNPs for use in association analysis exploring genotype-phenotype relationships at the whole-genome level. A total of 17 quantitative trait loci (QTLs) for rice quality traits were mapped to chromosomes 3, 5, 6, 8, and 9. 8 major QTLs controlling different phenotypic variations were mapped to the same region of chromosome 5. This region contained the GS5 gene for grain weight and the qSW5/GW5 gene for grain width. This study provides new resources and insights into the molecular mechanisms of grain trait phenotypic variation and the transmission of genetic information via the introduction of genomic DNA to a distantly related crop relative species.
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