Evidence map›Paper›PMID 26334176›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2016

Expanded genetic screening panel for the Ashkenazi Jewish population.

Brett Baskovich, Susan Hiraki, Kinnari Upadhyay, Philip Meyer, Shai Carmi, Nir Barzilai, Ariel Darvasi, Laurie Ozelius, Inga Peter, Judy H Cho and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 84 citations in OpenAlex.

  1. Article
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  4. Review
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  10. Article
  11. Estimating yields of prenatal carrier screening and implications for design of expanded carrier screening panels.Genetics in medicine : official journal of the American College of Medical Genetics · 2019
    Article
  12. Article
  13. Article
  14. Ashkenazi Jewish genomic variants: integrating data from the Israeli National Genetic Database and gnomAD.Genetics in medicine : official journal of the American College of Medical Genetics · 2018
    Article
  15. Article
  16. Revisiting the prevalence of nonclassic congenital adrenal hyperplasia in US Ashkenazi Jews and Caucasians.Genetics in medicine : official journal of the American College of Medical Genetics · 2017
    Article
  17. Assessing risk for Mendelian disorders in a Bronx population.Molecular genetics & genomic medicine · 2017
    Article
  18. Article
  19. Response to Zlotogora and Meiner.Genetics in medicine : official journal of the American College of Medical Genetics · 2016
    Article
  20. Ashkenazi carrier screening for reproductive planning: is this what we planned for?Genetics in medicine : official journal of the American College of Medical Genetics · 2016
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 2 countries.

Brett BaskovichDepartment of Pathology, Montefiore Medical Center, New York, New York, USA.
Susan HirakiDepartment of Pathology, Albert Einstein College of Medicine of Yeshiva University, New York, New York, USA.
Kinnari UpadhyayDepartment of Pathology, Albert Einstein College of Medicine of Yeshiva University, New York, New York, USA.
Philip MeyerDepartment of Pathology, Albert Einstein College of Medicine of Yeshiva University, New York, New York, USA.
Shai CarmiThe Faculty of Medicine, Braun School of Public Health, Hebrew University of Jerusalem, Jerusalem, Israel.
Nir BarzilaiDepartment of Pathology, Albert Einstein College of Medicine of Yeshiva University, New York, New York, USA.
Ariel DarvasiDepartment of Genetics, Hebrew University of Jerusalem, Givat Ram, Jerusalem.
Laurie OzeliusDepartment of Genetics, Icahn School of Medicine at Mount Sinai School of Medicine, New York, New York, USA.
Inga PeterDepartment of Genetics, Icahn School of Medicine at Mount Sinai School of Medicine, New York, New York, USA.
Judy H ChoDepartment of Genetics, Icahn School of Medicine at Mount Sinai School of Medicine, New York, New York, USA.
Gil AtzmonDepartment of Pathology, Albert Einstein College of Medicine of Yeshiva University, New York, New York, USA.
Lorraine ClarkDepartment of Pathology, Columbia University, New York, New York, USA.
Jin YuThe Feinstein Institute for Medical Research, Manhasset, New York, USA.
Todd LenczThe Feinstein Institute for Medical Research, Manhasset, New York, USA.
Itsik Pe'erDepartment of Computer Science, Columbia University, New York, New York, USA.
Harry OstrerDepartment of Pathology, Montefiore Medical Center, New York, New York, USA.ORCID 0000-0002-2209-5376
Carole OddouxDepartment of Pathology, Montefiore Medical Center, New York, New York, USA.ORCID 0000-0003-3971-6527
Albert Einstein College of Medicine · USIcahn School of Medicine at Mount Sinai · USColumbia University · USFeinstein Institute for Medical Research · USHebrew University of Jerusalem · ILMontefiore Medical Center · USYeshiva University · US

Funding

Nation Center: Multi-Scale Study- Cellular Networks(RMI)U54CA121852 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2005 to 2015
$37.4M
Translational Research CoreP30DK020541 · NIDDK · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI STREAMSON C CHUA · 2015 to 2026
$27.7M
Inflammatory Bowel Disease Genetics Consortium Data Coordinating CenterU01DK062429 · NIDDK · YALE UNIVERSITY · PI CHO, JUDY H. · 2002 to 2016
$16.8M
Precision IBD via genetics and genomics: integrating International and multi-omic datasets, expanding studies in diverse populations, and defining mechanisms of unmet clinical needs in IBDU24DK062429 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Ling-shiang Chuang, Ron Do · 2017 to 2026
$13.9M
Yale University Inflammatory Bowel Disease Genetics Research CenterU01DK062422 · NIDDK · YALE UNIVERSITY · PI Ling-shiang Chuang · 2002 to 2026
$10.8M
Einstein's Nathan Shock Center of Excellence in Basic Biology of AgingP30AG038072 · NIA · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI VIJG, JAN · 2010 to 2024
$10.8M
ROLE OF NUTRIENTS IN AGE-RELATED INSULIN RESISTANCEP01AG021654 · NIA · YESHIVA UNIVERSITY · PI BARZILAI, NIR J · 2003 to 2007
$10.6M
STATISTICS AND DATA MANAGEMENT COREP01AG027734 · NIA · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI MORROW, BERNICE E · 2007 to 2012
$9.3M
Next Generation Sequencing for Disease Mapping in a Founder PopulationR01MH095458 · NIMH · FEINSTEIN INSTITUTE FOR MEDICAL RESEARCH · PI DARVASI, ARIEL, LENCZ, TODD · 2013 to 2016
$3.8M
Common and Rare Genetic Factors in an Ethnically Homogeneous Schizophrenia CohortRC2MH089964 · NIMH · FEINSTEIN INSTITUTE FOR MEDICAL RESEARCH · PI LENCZ, TODD · 2009 to 2010
$3.5M
Defining the genetic architecture of IBD in Ashkenazi Jewish populationsR01DK092235 · NIDDK · YALE UNIVERSITY · PI CHO, JUDY H. · 2012 to 2016
$2.5M
LGP/LongenityR01AG046949 · NIA · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI BARZILAI, NIR J · 2013 to 2017
$2.4M
NCI NIH HHS U54 CA121852NIA NIH HHS P01 AG021654NIA NIH HHS P01 AG027734NIA NIH HHS P30 AG038072NIA NIH HHS R01 AG042188NIA NIH HHS R01 AG046949NIDDK NIH HHS P30 DK020541NIDDK NIH HHS R01 DK092235NIDDK NIH HHS U01 DK062422NIDDK NIH HHS U01 DK062429NIDDK NIH HHS U24 DK062429NIMH NIH HHS R01 MH084098NIMH NIH HHS R01 MH095458NIMH NIH HHS RC2 MH089964NINDS NIH HHS R01 NS060113NINDS NIH HHS R21 NS050487
6 · The paper itself

Abstract

purposeCarrier screening programs that identify the presence of known mutations have been effective for reducing the incidence of autosomal recessive conditions in the Ashkenazi Jewish (AJ) population and other populations. Yet, these programs have not realized their full potential. Furthermore, many known autosomal recessive and dominant conditions are not screened for and the molecular basis of other conditions for which screening might be offered is unknown.

methodsThrough literature review and annotation of full sequenced genomes from healthy individuals, we expanded the list of mutations. Mutations were identified in a sample of 128 fully sequenced AJ genomes that were filtered through clinical databases and curated manually for clinical validity and utility using the American College of Medical Genetics and Genomics scoring (ACMG) system. Other known mutations were identified through literature review.

resultsA panel of 163 mutations was identified for 76 autosomal recessive, 24 autosomal dominant, and 3 X-linked disorders.

conclusionScreening for a broader range of disorders not only could further reduce the incidence of autosomal recessive disorders but also could offer the benefits of early or presymptomatic diagnosis.Genet Med 18 5, 522-528.

Indexed as

Genetic TestingPrenatal DiagnosisFemaleGene FrequencyGenetic Carrier ScreeningHeterozygoteHumansJewsMaleMutationPregnancy

Identifiers

PMID26334176
PMCPMC4814352
OpenAlexW2269069682

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.