Evidence map›Paper›PMID 26327586›Full record

ArticlePLoS neglected tropical diseases2015

Analysis of Dengue Virus Genetic Diversity during Human and Mosquito Infection Reveals Genetic Constraints.

October M Sessions, Andreas Wilm, Uma Sangumathi Kamaraj, Milly M Choy, Angelia Chow, Yuwen Chong, Xin Mei Ong, Niranjan Nagarajan, Alex R Cook, Eng Eong Ooi

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
9.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 63 citations in OpenAlex.

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  8. Intra-Host Diversity of Dengue Virus in Mosquito Vectors.Frontiers in cellular and infection microbiology · 2022
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

October M SessionsProgram in Emerging Infectious Diseases, Duke-NUS Graduate Medical School, Singapore.
Andreas WilmComputational and Systems Biology, Genome Institute of Singapore, Singapore.
Uma Sangumathi KamarajProgram in Emerging Infectious Diseases, Duke-NUS Graduate Medical School, Singapore.
Milly M ChoyComputational and Systems Biology, Genome Institute of Singapore, Singapore.
Angelia ChowProgram in Emerging Infectious Diseases, Duke-NUS Graduate Medical School, Singapore.
Yuwen ChongProgram in Emerging Infectious Diseases, Duke-NUS Graduate Medical School, Singapore.
Xin Mei OngProgram in Emerging Infectious Diseases, Duke-NUS Graduate Medical School, Singapore.
Niranjan NagarajanComputational and Systems Biology, Genome Institute of Singapore, Singapore.
Alex R CookSaw Swee Hock School of Public Health, National University of Singapore and National University Health System, Singapore; Yale-NUS College, National University of Singapore, Singapore; Program in Health Services and Systems Research, Duke-NUS Graduate Medical School, Singapore.
Eng Eong OoiProgram in Emerging Infectious Diseases, Duke-NUS Graduate Medical School, Singapore.
Duke-NUS Medical School · SGGenome Institute of Singapore · SGYale-NUS College · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dengue viruses (DENV) cause debilitating and potentially life-threatening acute disease throughout the tropical world. While drug development efforts are underway, there are concerns that resistant strains will emerge rapidly. Indeed, antiviral drugs that target even conserved regions in other RNA viruses lose efficacy over time as the virus mutates. Here, we sought to determine if there are regions in the DENV genome that are not only evolutionarily conserved but genetically constrained in their ability to mutate and could hence serve as better antiviral targets. High-throughput sequencing of DENV-1 genome directly from twelve, paired dengue patients' sera and then passaging these sera into the two primary mosquito vectors showed consistent and distinct sequence changes during infection. In particular, two residues in the NS5 protein coding sequence appear to be specifically acquired during infection in Ae. aegypti but not Ae. albopictus. Importantly, we identified a region within the NS3 protein coding sequence that is refractory to mutation during human and mosquito infection. Collectively, these findings provide fresh insights into antiviral targets and could serve as an approach to defining evolutionarily constrained regions for therapeutic targeting in other RNA viruses.

Indexed as

Genetic VariationAnimalsConserved SequenceCulicidaeDengueDengue VirusFemaleGenotypeHigh-Throughput Nucleotide SequencingHumansProspective StudiesRNA, ViralRNA, Viral

Identifiers

PMID26327586
PMCPMC4556638
OpenAlexW1785470120

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.