Evidence map›Paper›PMID 26327194›Full record

ReviewRNA biology2015

Cis-regulatory RNA elements that regulate specialized ribosome activity.

Shifeng Xue, Maria Barna

Open access · bronzeAbstract readReview
In one paragraph

Review in RNA biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. A highly efficient human cell-free translation system.bioRxiv : the preprint server for biology · 2023
    Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Review
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  11. Review
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Shifeng Xuea Department of Developmental Biology, Stanford University ; Stanford , CA USA.
Maria Barnaa Department of Developmental Biology, Stanford University ; Stanford , CA USA.
Stanford University · US

Funding

Specialized ribosomes in control of gene expression and embryonic developmentDP2OD008509 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BARNA, MARIA · 2011 to 2011
$2.3M
NIH HHS 7DP2OD00850902NIH HHS DP2 OD008509
6 · The paper itself

Abstract

Recent evidence has shown that the ribosome itself can play a highly regulatory role in the specialized translation of specific subpools of mRNAs, in particular at the level of ribosomal proteins (RP). However, the mechanism(s) by which this selection takes place has remained poorly understood. In our recent study, we discovered a combination of unique RNA elements in the 5'UTRs of mRNAs that allows for such control by the ribosome. These mRNAs contain a Translation Inhibitory Element (TIE) that inhibits general cap-dependent translation, and an Internal Ribosome Entry Site (IRES) that relies on a specific RP for activation. The unique combination of an inhibitor of general translation and an activator of specialized translation is key to ribosome-mediated control of gene expression. Here we discuss how these RNA regulatory elements provide a new level of control to protein expression and their implications for gene expression, organismal development and evolution.

Indexed as

Protein Biosynthesis5' Untranslated RegionsGene Expression RegulationInternal Ribosome Entry SitesPolyribosomesRegulatory Sequences, Ribonucleic AcidRibosomal ProteinsRibosomesRNA, Messenger5' Untranslated RegionsInternal Ribosome Entry SitesRegulatory Sequences, Ribonucleic AcidRibosomal ProteinsRNA, Messenger5′UTRIRESRNA elementspecialized ribosometranslationtranslational inhibitory element

Identifiers

PMID26327194
PMCPMC4829338
OpenAlexW1883147488

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.