Evidence map›Paper›PMID 26324916›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Cysteine as a ligand platform in the biosynthesis of the FeFe hydrogenase H cluster.

Daniel L M Suess, Ingmar Bürstel, Liliana De La Paz, Jon M Kuchenreuther, Cindy C Pham, Stephen P Cramer, James R Swartz, R David Britt

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

  1. Article
  2. Characterization of Complex-B ([Fe(κJournal of the American Chemical Society · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Final Stages in the Biosynthesis of the [FeFe]-Hydrogenase Active Site.Angewandte Chemie (International ed. in English) · 2024
    Article
  7. Review
  8. Article
  9. Review
  10. Review
  11. Organometallic FeJournal of the American Chemical Society · 2022
    Article
  12. Article
  13. Biosynthesis of the [FeFe] hydrogenase H-clusterDalton transactions (Cambridge, England : 2003) · 2021
    Review
  14. HydG, the "dangler" iron, and catalytic production of free CO and CNDalton transactions (Cambridge, England : 2003) · 2021
    Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Daniel L M SuessDepartment of Chemistry, University of California, Davis, CA 95616;
Ingmar BürstelDepartment of Chemical Engineering, Stanford University, Stanford, CA 94305;
Liliana De La PazDepartment of Chemical Engineering, Stanford University, Stanford, CA 94305;
Jon M KuchenreutherDepartment of Chemistry, University of California, Davis, CA 95616;
Cindy C PhamDepartment of Chemistry, University of California, Davis, CA 95616;
Stephen P CramerDepartment of Chemistry, University of California, Davis, CA 95616;
James R SwartzDepartment of Chemical Engineering, Stanford University, Stanford, CA 94305; Department of Bioengineering, Stanford University, Stanford, CA 94305.
R David BrittDepartment of Chemistry, University of California, Davis, CA 95616; rdbritt@ucdavis.edu.

Funding

X-Ray Raman and Vibrational Mossbauer of MetalloproteinsR01GM065440 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI CRAMER, STEPHEN P. · 2002 to 2025
$7.3M
Mechanisms of Radical SAM Enzymes Probed by EPR SpectroscopyR01GM104543 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BRITT, R DAVID · 2014 to 2017
$1.2M
Mechanistic Investigations of [FeFe] Hydrogenase H-Cluster AssemblyF32GM111025 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI SUESS, DANIEL LEIF MIGDOW · 2014 to 2016
$158k
NIGMS NIH HHS F32 GM111025NIGMS NIH HHS GM104543NIGMS NIH HHS GM111025NIGMS NIH HHS GM65440NIGMS NIH HHS R01 GM065440NIGMS NIH HHS R01 GM104543
6 · The paper itself

Abstract

Hydrogenases catalyze the redox interconversion of protons and H2, an important reaction for a number of metabolic processes and for solar fuel production. In FeFe hydrogenases, catalysis occurs at the H cluster, a metallocofactor comprising a [4Fe-4S]H subcluster coupled to a [2Fe]H subcluster bound by CO, CN(-), and azadithiolate ligands. The [2Fe]H subcluster is assembled by the maturases HydE, HydF, and HydG. HydG is a member of the radical S-adenosyl-L-methionine family of enzymes that transforms Fe and L-tyrosine into an [Fe(CO)2(CN)] synthon that is incorporated into the H cluster. Although it is thought that the site of synthon formation in HydG is the "dangler" Fe of a [5Fe] cluster, many mechanistic aspects of this chemistry remain unresolved including the full ligand set of the synthon, how the dangler Fe initially binds to HydG, and how the synthon is released at the end of the reaction. To address these questions, we herein show that L-cysteine (Cys) binds the auxiliary [4Fe-4S] cluster of HydG and further chelates the dangler Fe. We also demonstrate that a [4Fe-4S]aux[CN] species is generated during HydG catalysis, a process that entails the loss of Cys and the [Fe(CO)2(CN)] fragment; on this basis, we suggest that Cys likely completes the coordination sphere of the synthon. Thus, through spectroscopic analysis of HydG before and after the synthon is formed, we conclude that Cys serves as the ligand platform on which the synthon is built and plays a role in both Fe(2+) binding and synthon release.

Indexed as

CatalysisCatalytic DomainCysteineElectron Spin Resonance SpectroscopyEscherichia coli ProteinsHydrogenaseIronIron-Sulfur ProteinsLigandsMethioninePotassium CyanideProtein BindingProtonsSolar EnergyTrans-ActivatorsTyrosineCysteineEscherichia coli ProteinsHydrogenaseIronIron-Sulfur ProteinsLigandsMethioninePotassium CyanideProtonsTrans-ActivatorsTyrosinezraR protein, E coliFeFe hydrogenaseHydGmetallocofactor biosynthesis

Identifiers

PMID26324916
PMCPMC4577183

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.