Evidence map›Paper›PMID 26324906›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

The genome of Aiptasia, a sea anemone model for coral symbiosis.

Sebastian Baumgarten, Oleg Simakov, Lisl Y Esherick, Yi Jin Liew, Erik M Lehnert, Craig T Michell, Yong Li, Elizabeth A Hambleton, Annika Guse, Matt E Oates and 5 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 217 papers.

0numbers the graph read from it
0cells of the map it votes in
217citing papers in PubMed
45.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

217 citing papers in PubMed, 465 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. The genome of the reef-building coralGigaByte (Hong Kong, China) · 2026
    Article
  14. Article
  15. The genome of the coral model sea anemoneGigaByte (Hong Kong, China) · 2026
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

157 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 4 countries.

Sebastian BaumgartenRed Sea Research Center, Division of Biological and Environmental Science and Engineering, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia;
Oleg SimakovCentre for Organismal Studies, Heidelberg University, 69120 Heidelberg, Germany;
Lisl Y EsherickDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305;
Yi Jin LiewRed Sea Research Center, Division of Biological and Environmental Science and Engineering, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia;
Erik M LehnertDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305;
Craig T MichellRed Sea Research Center, Division of Biological and Environmental Science and Engineering, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia;
Yong LiRed Sea Research Center, Division of Biological and Environmental Science and Engineering, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia;ORCID http://orcid.org/0000-0003-2609-2401
Elizabeth A HambletonCentre for Organismal Studies, Heidelberg University, 69120 Heidelberg, Germany;
Annika GuseCentre for Organismal Studies, Heidelberg University, 69120 Heidelberg, Germany;
Matt E OatesDepartment of Computer Science, University of Bristol, Bristol BS8 1UB, United Kingdom;
Julian GoughDepartment of Computer Science, University of Bristol, Bristol BS8 1UB, United Kingdom;
Virginia M WeisDepartment of Integrative Biology, Oregon State University, Corvallis, OR 97331.
Manuel ArandaRed Sea Research Center, Division of Biological and Environmental Science and Engineering, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia;ORCID http://orcid.org/0000-0001-6673-016X
John R PringleDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305; christian.voolstra@kaust.edu.sa jpringle@stanford.edu.
Christian R VoolstraRed Sea Research Center, Division of Biological and Environmental Science and Engineering, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia; christian.voolstra@kaust.edu.sa jpringle@stanford.edu.
King Abdullah University of Science and Technology · SAHeidelberg University · DEStanford University · USUniversity of Bristol · GBOregon State University · US

Funding

INSTITUTIONAL TRAINING GRANT IN GENOME SCIENCET32HG000044 · NHGRI · STANFORD UNIVERSITY · PI MICHAEL P. SNYDER · 1995 to 2026
$32.2M
Biotechnology and Biological Sciences Research Council BB/G022771/1NHGRI NIH HHS 5 T32 HG000044NHGRI NIH HHS T32 HG000044
6 · The paper itself

Abstract

The most diverse marine ecosystems, coral reefs, depend upon a functional symbiosis between a cnidarian animal host (the coral) and intracellular photosynthetic dinoflagellate algae. The molecular and cellular mechanisms underlying this endosymbiosis are not well understood, in part because of the difficulties of experimental work with corals. The small sea anemone Aiptasia provides a tractable laboratory model for investigating these mechanisms. Here we report on the assembly and analysis of the Aiptasia genome, which will provide a foundation for future studies and has revealed several features that may be key to understanding the evolution and function of the endosymbiosis. These features include genomic rearrangements and taxonomically restricted genes that may be functionally related to the symbiosis, aspects of host dependence on alga-derived nutrients, a novel and expanded cnidarian-specific family of putative pattern-recognition receptors that might be involved in the animal-algal interactions, and extensive lineage-specific horizontal gene transfer. Extensive integration of genes of prokaryotic origin, including genes for antimicrobial peptides, presumably reflects an intimate association of the animal-algal pair also with its prokaryotic microbiome.

Indexed as

AnimalsAnthozoaChromosomesEvolution, MolecularGene Expression ProfilingGene Transfer, HorizontalGenomeGenome SizeMicrobial InteractionsModels, BiologicalMolecular Sequence AnnotationPhylogenyRepetitive Sequences, Nucleic AcidSea AnemonesSymbiosisSyntenycoral reefsdinoflagellateendosymbiosishorizontal gene transferpattern-recognition receptors

Identifiers

PMID26324906
PMCPMC4586855
OpenAlexW1961438741

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.