Evidence map›Paper›PMID 26324718›Full record

ArticleThe Journal of biological chemistry2015

Perturbation of the Vacuolar ATPase: A NOVEL CONSEQUENCE OF INOSITOL DEPLETION.

Rania M Deranieh, Yihui Shi, Maureen Tarsio, Yan Chen, J Michael McCaffery, Patricia M Kane, Miriam L Greenberg

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Rania M DeraniehFrom the Department of Biological Sciences, Wayne State University, Detroit, Michigan 48202.
Yihui ShiFrom the Department of Biological Sciences, Wayne State University, Detroit, Michigan 48202.
Maureen Tarsiothe Department of Biochemistry and Molecular Biology, State University of New York Upstate Medical University, Syracuse, New York 13210, and.
Yan ChenFrom the Department of Biological Sciences, Wayne State University, Detroit, Michigan 48202.
J Michael McCafferythe Integrated Imaging Center, Department of Biology, Johns Hopkins University, Baltimore, Maryland 21218.
Patricia M Kanethe Department of Biochemistry and Molecular Biology, State University of New York Upstate Medical University, Syracuse, New York 13210, and.
Miriam L GreenbergFrom the Department of Biological Sciences, Wayne State University, Detroit, Michigan 48202, mlgreen@sun.science.wayne.edu.
Wayne State University · USSUNY Upstate Medical University · US

Funding

SUBUNIT STRUCTURE/FUNCTION IN VACUOLAR H+ ATPASESR01GM050322 · NIGMS · UPSTATE MEDICAL UNIVERSITY · PI KANE, PATRICIA M · 1994 to 2015
$4.1M
A NOVEL MECHANISM OF REGULATION OF INOSITOL BIOSYNTHESIS IN YEASTR01DK081367 · NIDDK · WAYNE STATE UNIVERSITY · PI GREENBERG, MIRIAM L · 2009 to 2012
$1.5M
NIDDK NIH HHS DK 081367NIDDK NIH HHS R01 DK081367NIGMS NIH HHS GM 50322NIGMS NIH HHS R01 GM050322
6 · The paper itself

Abstract

Depletion of inositol has profound effects on cell function and has been implicated in the therapeutic effects of drugs used to treat epilepsy and bipolar disorder. We have previously shown that the anticonvulsant drug valproate (VPA) depletes inositol by inhibiting myo-inositol-3-phosphate synthase, the enzyme that catalyzes the first and rate-limiting step of inositol biosynthesis. To elucidate the cellular consequences of inositol depletion, we screened the yeast deletion collection for VPA-sensitive mutants and identified mutants in vacuolar sorting and the vacuolar ATPase (V-ATPase). Inositol depletion caused by starvation of ino1Δ cells perturbed the vacuolar structure and decreased V-ATPase activity and proton pumping in isolated vacuolar vesicles. VPA compromised the dynamics of phosphatidylinositol 3,5-bisphosphate (PI3,5P2) and greatly reduced V-ATPase proton transport in inositol-deprived wild-type cells. Osmotic stress, known to increase PI3,5P2 levels, did not restore PI3,5P2 homeostasis nor did it induce vacuolar fragmentation in VPA-treated cells, suggesting that perturbation of the V-ATPase is a consequence of altered PI3,5P2 homeostasis under inositol-limiting conditions. This study is the first to demonstrate that inositol depletion caused by starvation of an inositol synthesis mutant or by the inositol-depleting drug VPA leads to perturbation of the V-ATPase.

Indexed as

AnticonvulsantsDrug Resistance, FungalGene DeletionHomeostasisInositolIntramolecular LyasesMyo-Inositol-1-Phosphate SynthaseOsmotic PressurePhosphatidylinositol PhosphatesProtein TransportSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsVacuolar Proton-Translocating ATPasesVacuolesValproic AcidAnticonvulsantsD-myo-inositol-3-phosphate synthaseINO1 protein, S cerevisiaeInositolIntramolecular LyasesMyo-Inositol-1-Phosphate Synthasephosphatidylinositol 3,5-diphosphatePhosphatidylinositol PhosphatesSaccharomyces cerevisiae ProteinsVacuolar Proton-Translocating ATPasesValproic Acidanticonvulsantbipolar disorderinositolphosphoinositidevacuolar ATPasevacuolevalproateyeastyeast physiology

Identifiers

PMID26324718
PMCPMC4645999
OpenAlexW1793976085

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.