Evidence map›Paper›PMID 26324325›Full record

ArticleMolecular and cellular biology2015

PPM1G Binds 7SK RNA and Hexim1 To Block P-TEFb Assembly into the 7SK snRNP and Sustain Transcription Elongation.

Swapna Aravind Gudipaty, Ryan P McNamara, Emily L Morton, Iván D'Orso

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Progress in 7SK ribonucleoprotein structural biology.Frontiers in molecular biosciences · 2023
    Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. P-TEFb as A Promising Therapeutic Target.Molecules (Basel, Switzerland) · 2020
    Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Swapna Aravind GudipatyDepartment of Microbiology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Ryan P McNamaraDepartment of Microbiology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Emily L MortonDepartment of Microbiology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Iván D'OrsoDepartment of Microbiology, University of Texas Southwestern Medical Center, Dallas, Texas, USA Ivan.Dorso@utsouthwestern.edu.
The University of Texas Southwestern Medical Center · US

Funding

UT Southwestern Medical Center Simmons Comprehensive Cancer CenterP30CA142543 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI Sandi Leigh Pruitt · 2010 to 2026
$53.7M
MOLECULAR MICROBIOLOGY TRAINING GRANTT32AI007520 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI Julie K Pfeiffer · 1997 to 2026
$7.0M
Transcriptional regulatory mechanisms shaping HIV proviral fateR01AI114362 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI D'ORSO, IVAN · 2015 to 2024
$4.6M
Transcriptional regulatory mechanisms shaping HIV proviral fateR37AI114362 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI Ivan D'Orso · 2025 to 2026
$1.0M
Assembly of HIV -1 and Cellular Transcription Elongation ComplexesR00AI083087 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI D'ORSO, IVAN · 2011 to 2012
$514k
Studies of HIV and Host Transcriptional Control by TatR56AI106514 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI D'ORSO, IVAN · 2014 to 2014
$382k
Intramural NIH HHSNCI NIH HHS 5P30CA142543NCI NIH HHS P30 CA142543NIAID NIH HHS R00 AI083087NIAID NIH HHS R00AI083087NIAID NIH HHS R01 AI114362NIAID NIH HHS R01AI114362NIAID NIH HHS R37 AI114362NIAID NIH HHS R56 AI106514NIAID NIH HHS R56AI106514NIAID NIH HHS T32 2T32AI007520-16NIAID NIH HHS T32 AI007520
6 · The paper itself

Abstract

Transcription elongation programs are vital for the precise regulation of several biological processes. One key regulator of such programs is the P-TEFb kinase, which phosphorylates RNA polymerase II (Pol II) once released from the inhibitory 7SK small nuclear ribonucleoprotein (snRNP) complex. Although mechanisms of P-TEFb release from the snRNP are becoming clearer, how P-TEFb remains in the 7SK-unbound state to sustain transcription elongation programs remains unknown. Here we report that the PPM1G phosphatase (inducibly recruited by nuclear factor κB [NF-κB] to target promoters) directly binds 7SK RNA and the kinase inhibitor Hexim1 once P-TEFb has been released from the 7SK snRNP. This dual binding activity of PPM1G blocks P-TEFb reassembly onto the snRNP to sustain NF-κB-mediated Pol II transcription in response to DNA damage. Notably, the PPM1G-7SK RNA interaction is direct, kinetically follows the recruitment of PPM1G to promoters to activate NF-κB transcription, and is reversible, since the complex disassembles before resolution of the program. Strikingly, we found that the ataxia telangiectasia mutated (ATM) kinase regulates the interaction between PPM1G and the 7SK snRNP through site-specific PPM1G phosphorylation. The precise and temporally regulated interaction of a cellular enzyme and a noncoding RNA provides a new paradigm for simultaneously controlling the activation and maintenance of inducible transcription elongation programs.

Indexed as

Transcriptional ActivationAtaxia Telangiectasia Mutated ProteinsDNA DamageHEK293 CellsHeLa CellsHumansModels, MolecularNF-kappa BNucleic Acid ConformationPhosphoprotein PhosphatasesPositive Transcriptional Elongation Factor BProtein BindingProtein Phosphatase 2CProtein Structure, TertiaryRibonucleoproteins, Small NuclearRNA-Binding ProteinsAtaxia Telangiectasia Mutated ProteinsHEXIM1 protein, humanNF-kappa BPhosphoprotein PhosphatasesPositive Transcriptional Elongation Factor BPPM1G protein, humanProtein Phosphatase 2CRibonucleoproteins, Small NuclearRNA-Binding ProteinsRNA Polymerase IIRNA, Small NuclearTranscription Factors

Identifiers

PMID26324325
PMCPMC4609742
OpenAlexW1872669470

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.