Evidence map›Paper›PMID 26323597›Full record

ArticleThe pharmacogenomics journal2016

Interindividual variability of CYP2C19-catalyzed drug metabolism due to differences in gene diplotypes and cytochrome P450 oxidoreductase content.

Y Shirasaka, A S Chaudhry, M McDonald, B Prasad, T Wong, J C Calamia, A Fohner, T A Thornton, N Isoherranen, J D Unadkat and 3 more

Open access · hybridAbstract read
In one paragraph

Article in The pharmacogenomics journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 72 citations in OpenAlex.

  1. Article
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  4. PeerJ · 2025
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  7. Cytochrome P450 FamilyACS pharmacology & translational science · 2024
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  9. The Utility of Mixed Effects Models in the Evaluation of Complex Genomic Traits In Vitro.Drug metabolism and disposition: the biological fate of chemicals · 2023
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  10. The impact ofFrontiers in pharmacology · 2023
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  16. Article
  17. Observational
  18. Prevalence of five pharmacologically most importantArhiv za higijenu rada i toksikologiju · 2021
    Article
  19. In Vivo Functional Effects ofDrug metabolism and disposition: the biological fate of chemicals · 2021
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  20. Characterization of primary mouse hepatocyte spheroids as a model system to support investigations of drug-induced liver injury.Toxicology in vitro : an international journal published in association with BIBRA · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Y ShirasakaDepartment of Pharmaceutics, School of Pharmacy, University of Washington, Seattle, WA, USA.
A S ChaudhryDepartment of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, TN, USA.
M McDonaldDepartment of Medicinal Chemistry, School of Pharmacy, University of Washington, Seattle, WA, USA.
B PrasadDepartment of Pharmaceutics, School of Pharmacy, University of Washington, Seattle, WA, USA.
T WongDepartment of Pharmaceutics, School of Pharmacy, University of Washington, Seattle, WA, USA.
J C CalamiaDepartment of Pharmaceutics, School of Pharmacy, University of Washington, Seattle, WA, USA.
A FohnerDepartment of Pharmaceutics, School of Pharmacy, University of Washington, Seattle, WA, USA.
T A ThorntonDepartment of Biostatistics, School of Public Health, University of Washington, Seattle, WA, USA.
N IsoherranenDepartment of Pharmaceutics, School of Pharmacy, University of Washington, Seattle, WA, USA.
J D UnadkatDepartment of Pharmaceutics, School of Pharmacy, University of Washington, Seattle, WA, USA.
A E RettieDepartment of Medicinal Chemistry, School of Pharmacy, University of Washington, Seattle, WA, USA.
E G SchuetzDepartment of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, TN, USA.
K E ThummelDepartment of Pharmaceutics, School of Pharmacy, University of Washington, Seattle, WA, USA.
University of Washington · USSt. Jude Children's Research Hospital · US

Funding

XENOBIOTIC BIOTRANSFORMATION AND DISPOSITIONP30ES007033 · NIEHS · UNIVERSITY OF WASHINGTON · PI ALI SHOJAIE · 1995 to 2026
$42.5M
TOXIC DRUG INTERACTIONS WITH VALPROIC ACIDP01GM032165 · NIGMS · UNIVERSITY OF WASHINGTON · PI RETTIE, ALLAN EDWARD · 1985 to 2012
$18.3M
Pharmacological Sciences SupplementT32GM007750 · NIGMS · UNIVERSITY OF WASHINGTON · PI ATKINS, WILLIAM M · 1985 to 2023
$12.6M
Pharmacogenetics in Rural and Underserved PopulationsU01GM092676 · NIGMS · UNIVERSITY OF WASHINGTON · PI BURKE, WYLIE G., THUMMEL, KENNETH E. · 2010 to 2014
$9.9M
PAARK4Kids-Pharmacogenomics of Anticancer Agents Research in ChildrenU01GM092666 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI RELLING, MARY V · 2010 to 2014
$8.9M
Statistical Methods for X-Chromosome Genetic DataP01GM099568 · NIGMS · UNIVERSITY OF WASHINGTON · PI WEIR, BRUCE S. · 2012 to 2016
$7.3M
Genetic Predictors of Human Liver CYP Expression & ActivityR01GM094418 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI SCHUETZ, ERIN G · 2010 to 2013
$1.4M
Statistical Methods for Cancer Genetic Association Studies with Hidden PopulationK01CA148958 · NCI · UNIVERSITY OF WASHINGTON · PI THORNTON, TIMOTHY ALVIN · 2010 to 2014
$682k
NCI NIH HHS K01 CA148958NIEHS NIH HHS P30 ES007033NIGMS NIH HHS P01 GM032165NIGMS NIH HHS P01 GM099568NIGMS NIH HHS R01 GM094418NIGMS NIH HHS T32 GM007750NIGMS NIH HHS U01 GM092666NIGMS NIH HHS U01 GM092676
6 · The paper itself

Abstract

Large interindividual variability has been observed in the metabolism of CYP2C19 substrates in vivo. The study aimed to evaluate sources of this variability in CYP2C19 activity, focusing on CYP2C19 diplotypes and the cytochrome P450 oxidoreductase (POR). CYP2C19 gene analysis was carried out on 347 human liver samples. CYP2C19 activity assayed using human liver microsomes confirmed a significant a priori predicted rank order for (S)-mephenytoin hydroxylase activity of CYP2C19*17/*17 > *1B/*17 > *1B/*1B > *2A/*17 > *1B/*2A > *2A/*2A diplotypes. In a multivariate analysis, the CYP2C19*2A allele and POR protein content were associated with CYP2C19 activity. Further analysis indicated a strong effect of the CYP2C19*2A, but not the *17, allele on both metabolic steps in the conversion of clopidogrel to its active metabolite. The present study demonstrates that interindividual variability in CYP2C19 activity is due to differences in both CYP2C19 protein content associated with gene diplotypes and the POR concentration.The Pharmacogenomics Journal advance online publication, 1 September 2015; doi:10.1038/tpj.2015.58.

Indexed as

Activation, MetabolicAdolescentAdultAgedAged, 80 and overChildChild, PreschoolClopidogrelCytochrome P-450 CYP2C19Cytochrome P-450 Enzyme SystemFemaleGene Expression Regulation, EnzymologicGene FrequencyGenotypeHumansHydroxylationClopidogrelCYP2C19 protein, humanCytochrome P-450 CYP2C19Cytochrome P-450 Enzyme SystemMephenytoinPOR protein, humanTiclopidine

Identifiers

PMID26323597
PMCPMC4775436
OpenAlexW1804639872

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.