Evidence map›Paper›PMID 26322836›Full record

ArticleNature methods2015

Programmed synthesis of three-dimensional tissues.

Michael E Todhunter, Noel Y Jee, Alex J Hughes, Maxwell C Coyle, Alec Cerchiari, Justin Farlow, James C Garbe, Mark A LaBarge, Tejal A Desai, Zev J Gartner

Abstract read
In one paragraph

Article in Nature methods, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 114 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
114citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

114 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Membrane-Associated Biomolecules for Synthetic Cell Signalling.Chembiochem : a European journal of chemical biology · 2026
    Review
  3. Article
  4. Article
  5. Review
  6. Programming cellular condensates for living materials using an intrinsically disordered protein display platform.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. DNA-programmed cell assembly: from cells, tissues to organoids.Frontiers in bioengineering and biotechnology · 2025
    Review
  11. Precision Cell-Cell Assembly Through Light-Mediated DNA Interactions.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Engineering Heterogeneous Tumor Models for Biomedical Applications.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Review
  18. Article
  19. Cell Surface Engineering Tools for Programming Living Assemblies.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2023
    Review
  20. Article

54 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Michael E TodhunterDepartment of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, California, USA.
Noel Y JeeDepartment of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, California, USA.ORCID http://orcid.org/0000-0002-7145-7425
Alex J HughesDepartment of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, California, USA.ORCID http://orcid.org/0000-0001-6801-3455
Maxwell C CoyleDepartment of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, California, USA.
Alec CerchiariDepartment of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, California, USA.
Justin FarlowDepartment of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, California, USA.
James C GarbeDepartment of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, California, USA.
Mark A LaBargeLife Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Tejal A DesaiChemistry &Chemical Biology Graduate Program, University of California, San Francisco, San Francisco, California, USA.
Zev J GartnerDepartment of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, California, USA.

Funding

Rewiring Therapeutic Cells: User-Controlled T Cells and Stem CellsP50GM081879 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LIM, WENDELL A · 2010 to 2017
$19.0M
RESEARCH TRAINING IN CHEMISTRY AND CHEMICAL BIOLOGYT32GM064337 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CRAIK, CHARLES SCOTT · 2002 to 2021
$7.8M
Total synthesis of the human mammary glandDP2HD080351 · NICHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GARTNER, ZEV JORDAN · 2013 to 2013
$2.4M
Age-related shifts in epithelial lineages and tissue homeostasis in mammary gland 5R01AG040081-05R01AG040081 · NIA · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI LABARGE, MARK A · 2011 to 2015
$2.3M
NCCDPHP CDC HHS DP2 HD080351-01NIA NIH HHS R01 AG040081NICHD NIH HHS DP2 HD080351NIGMS NIH HHS P50 GM081879NIGMS NIH HHS T32 GM064337
6 · The paper itself

Abstract

Reconstituting tissues from their cellular building blocks facilitates the modeling of morphogenesis, homeostasis and disease in vitro. Here we describe DNA-programmed assembly of cells (DPAC), a method to reconstitute the multicellular organization of organoid-like tissues having programmed size, shape, composition and spatial heterogeneity. DPAC uses dissociated cells that are chemically functionalized with degradable oligonucleotide 'Velcro', allowing rapid, specific and reversible cell adhesion to other surfaces coated with complementary DNA sequences. DNA-patterned substrates function as removable and adhesive templates, and layer-by-layer DNA-programmed assembly builds arrays of tissues into the third dimension above the template. DNase releases completed arrays of organoid-like microtissues from the template concomitant with full embedding in a variety of extracellular matrix (ECM) gels. DPAC positions subpopulations of cells with single-cell spatial resolution and generates cultures several centimeters long. We used DPAC to explore the impact of ECM composition, heterotypic cell-cell interactions and patterns of signaling heterogeneity on collective cell behaviors.

Indexed as

Cell AdhesionCell CommunicationDeoxyribonucleasesDNAEpithelial CellsExtracellular MatrixHumansHuman Umbilical Vein Endothelial CellsImage Processing, Computer-AssistedOligonucleotidesOrganoidsStromal CellsTissue EngineeringDeoxyribonucleasesDNAOligonucleotides

Identifiers

PMID26322836
PMCPMC4589502

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.