Evidence map›Paper›PMID 26322740›Full record

ArticleBiochemistry2015

Membrane Docking of the Synaptotagmin 7 C2A Domain: Electron Paramagnetic Resonance Measurements Show Contributions from Two Membrane Binding Loops.

J Ryan Osterberg, Nara Lee Chon, Arthur Boo, Favinn A Maynard, Hai Lin, Jefferson D Knight

Abstract read
In one paragraph

Article in Biochemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

J Ryan OsterbergDepartment of Chemistry, University of Colorado Denver , Denver, Colorado 80217, United States.
Nara Lee ChonDepartment of Chemistry, University of Colorado Denver , Denver, Colorado 80217, United States.
Arthur BooDepartment of Chemistry, University of Colorado Denver , Denver, Colorado 80217, United States.
Favinn A MaynardDepartment of Chemistry, University of Colorado Denver , Denver, Colorado 80217, United States.
Hai LinDepartment of Chemistry, University of Colorado Denver , Denver, Colorado 80217, United States.
Jefferson D KnightDepartment of Chemistry, University of Colorado Denver , Denver, Colorado 80217, United States.
University of Colorado Denver · US

Funding

BRAiN: Building Research Achievement in NeuroscienceR25GM097633 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI RESTREPO, DIEGO, SERRANO, ELBA E · 2010 to 2011
$880k
Molecular Mechanisms of Protein-Membrane Interactions Driving Insulin SecretionR15GM102866 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI KNIGHT, JEFFERSON D. · 2014 to 2018
$871k
NIGMS NIH HHS R15 GM102866NIGMS NIH HHS R15GM102866NIGMS NIH HHS R25 GM097633NIGMS NIH HHS R25GM097633
6 · The paper itself

Abstract

The synaptotagmin (Syt) family of proteins plays an important role in vesicle docking and fusion during Ca(2+)-induced exocytosis in a wide variety of cell types. Its role as a Ca(2+) sensor derives primarily from its two C2 domains, C2A and C2B, which insert into anionic lipid membranes upon binding Ca(2+). Syt isoforms 1 and 7 differ significantly in their Ca(2+) sensitivity; the C2A domain from Syt7 binds Ca(2+) and membranes much more tightly than the C2A domain from Syt1, at least in part because of greater contributions from the hydrophobic effect. While the structure and membrane activity of Syt1 have been extensively studied, the structural origins of differences between Syt1 and Syt7 are unknown. This study used site-directed spin labeling and electron paramagnetic resonance spectroscopy to determine depth parameters for the Syt7 C2A domain, for comparison to analogous previous measurements with the Syt1 C2A domain. In a novel approach, the membrane docking geometry of both Syt1 and Syt7 C2A was modeled by mapping depth parameters onto multiple molecular dynamics-simulated structures of the Ca(2+)-bound protein. The models reveal membrane penetration of Ca(2+) binding loops 1 (CBL1) and 3 (CBL3), and membrane binding is more sensitive to mutations in CBL3. On average, Syt7 C2A inserts more deeply into the membrane than Syt1 C2A, although depths vary among the different structural models. This observation provides a partial structural explanation for the hydrophobically driven membrane docking of Syt7 C2A.

Indexed as

Molecular Docking SimulationBinding SitesElectron Spin Resonance SpectroscopyKineticsMutagenesis, Site-DirectedProtein Structure, TertiarySynaptotagminsUnilamellar LiposomesSynaptotagminsUnilamellar Liposomes

Identifiers

PMID26322740
PMCPMC4630001
OpenAlexW1418660035

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.