Evidence map›Paper›PMID 26322480›Full record

ArticleNature immunology2015

The transcription factor ATF7 mediates lipopolysaccharide-induced epigenetic changes in macrophages involved in innate immunological memory.

Keisuke Yoshida, Toshio Maekawa, Yujuan Zhu, Claire Renard-Guillet, Bruno Chatton, Kentaro Inoue, Takeru Uchiyama, Ken-ichi Ishibashi, Takuji Yamada, Naohito Ohno and 3 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature immunology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 120 papers.

0numbers the graph read from it
0cells of the map it votes in
120citing papers in PubMed
9.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

120 citing papers in PubMed, 188 citations in OpenAlex.

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  13. ATF7-PINK1 Axis Governs Mitophagy and Intestinal Inflammation in Ulcerative Colitis.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
    Article
  14. Review
  15. Review
  16. Role of Trained Immunity in Heath and Disease.Current cardiology reports · 2025
    Review
  17. Unzipping the defense: a comprehensive review on bZIP transcription factors inFrontiers in cellular and infection microbiology · 2025
    Review
  18. Article
  19. Article
  20. Article

60 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 7 institutions in 2 countries.

Keisuke YoshidaLaboratory of Molecular Genetics, CREST Research Project of the Japan Science and Technology Agency, RIKEN Tsukuba Institute, Tsukuba, Japan.
Toshio MaekawaLaboratory of Molecular Genetics, CREST Research Project of the Japan Science and Technology Agency, RIKEN Tsukuba Institute, Tsukuba, Japan.
Yujuan ZhuLaboratory of Molecular Genetics, CREST Research Project of the Japan Science and Technology Agency, RIKEN Tsukuba Institute, Tsukuba, Japan.
Claire Renard-GuilletLaboratory of Genome Structure and Function, Research Center for Epigenetic Disease, Institute of Molecular and Cellular Biosciences, University of Tokyo, Tokyo, Japan.
Bruno ChattonUniversité de Strasbourg, UMR7242 Biotechnologie et Signalisation Cellulaire, Illkirch, France.
Kentaro InoueLaboratory for Integrated Cellular Systems, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Takeru UchiyamaDepartment of Biological Information, Tokyo Institute of Technology, Graduate School of Bioscience and Biotechnology, Yokohama, Japan.
Ken-ichi IshibashiLaboratory for Immunopharmacology of Microbial Products, School of Pharmacy, Tokyo University of Pharmacy &Life Sciences, Tokyo, Japan.
Takuji YamadaDepartment of Biological Information, Tokyo Institute of Technology, Graduate School of Bioscience and Biotechnology, Yokohama, Japan.
Naohito OhnoLaboratory for Immunopharmacology of Microbial Products, School of Pharmacy, Tokyo University of Pharmacy &Life Sciences, Tokyo, Japan.
Katsuhiko ShirahigeLaboratory of Genome Structure and Function, Research Center for Epigenetic Disease, Institute of Molecular and Cellular Biosciences, University of Tokyo, Tokyo, Japan.
Mariko Okada-HatakeyamaLaboratory for Integrated Cellular Systems, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Shunsuke IshiiLaboratory of Molecular Genetics, CREST Research Project of the Japan Science and Technology Agency, RIKEN Tsukuba Institute, Tsukuba, Japan.
Japan Science and Technology Agency · JPRIKEN Center for Integrative Medical Sciences · JPThe University of Tokyo · JPTokyo Institute of Technology · JPTokyo University of Pharmacy and Life Sciences · JPUniversity of Tsukuba · JPUniversité de Strasbourg · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Immunological memory is thought to be mediated exclusively by lymphocytes. However, enhanced innate immune responses caused by a previous infection increase protection against reinfection, which suggests the presence of innate immunological memory. Here we identified an important role for the stress-response transcription factor ATF7 in innate immunological memory. ATF7 suppressed a group of genes encoding factors involved in innate immunity in macrophages by recruiting the histone H3K9 dimethyltransferase G9a. Treatment with lipopolysaccharide, which mimics bacterial infection, induced phosphorylation of ATF7 via the kinase p38, which led to the release of ATF7 from chromatin and a decrease in repressive histone H3K9me2 marks. A partially disrupted chromatin structure and increased basal expression of target genes were maintained for long periods, which enhanced resistance to pathogens. ATF7 might therefore be important in controlling memory in cells of the innate immune system.

Indexed as

Activating Transcription FactorsAnimalsEpigenesis, GeneticImmunologic MemoryLipopolysaccharidesMacrophagesMiceReverse Transcriptase Polymerase Chain ReactionActivating Transcription FactorsATF7 protein, humanLipopolysaccharides

Identifiers

PMID26322480
OpenAlexW2101012179

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.