Evidence map›Paper›PMID 26322075›Full record

ArticleFrontiers in genetics2015

Changes in expression of the long non-coding RNA FMR4 associate with altered gene expression during differentiation of human neural precursor cells.

Veronica J Peschansky, Chiara Pastori, Zane Zeier, Dario Motti, Katya Wentzel, Dmitry Velmeshev, Marco Magistri, John L Bixby, Vance P Lemmon, José P Silva and 1 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Frontiers in genetics · 2022
    Article
  5. Review
  6. From Junk to Function: LncRNAs in CNS Health and Disease.Frontiers in molecular neuroscience · 2021
    Review
  7. Invited Review: Epigenetics in neurodevelopment.Neuropathology and applied neurobiology · 2020
    Review
  8. Article
  9. Review
  10. Review
  11. Review
  12. Review
  13. Review
  14. Article
  15. Human pluripotent stem cell models of Fragile X syndrome.Molecular and cellular neurosciences · 2016
    Review
  16. Structure Prediction: New Insights into Decrypting Long Noncoding RNAs.International journal of molecular sciences · 2016
    Review
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Veronica J PeschanskyCenter for Therapeutic Innovation and Department of Psychiatry and Behavioral Sciences, Miller School of Medicine, University of Miami Miami, FL, USA.
Chiara PastoriCenter for Therapeutic Innovation and Department of Psychiatry and Behavioral Sciences, Miller School of Medicine, University of Miami Miami, FL, USA.
Zane ZeierCenter for Therapeutic Innovation and Department of Psychiatry and Behavioral Sciences, Miller School of Medicine, University of Miami Miami, FL, USA.
Dario MottiMiami Project to Cure Paralysis, University of Miami Miami, FL, USA.
Katya WentzelCenter for Therapeutic Innovation and Department of Psychiatry and Behavioral Sciences, Miller School of Medicine, University of Miami Miami, FL, USA.
Dmitry VelmeshevCenter for Therapeutic Innovation and Department of Psychiatry and Behavioral Sciences, Miller School of Medicine, University of Miami Miami, FL, USA.
Marco MagistriCenter for Therapeutic Innovation and Department of Psychiatry and Behavioral Sciences, Miller School of Medicine, University of Miami Miami, FL, USA.
John L BixbyMiami Project to Cure Paralysis, University of Miami Miami, FL, USA ; Department of Neurological Surgery, Miller School of Medicine, University of Miami Miami, FL, USA ; Center for Computational Science, University of Miami, Coral Gables, FL USA ; Department of Molecular and Cellular Pharmacology, Miller School of Medicine, University of Miami Miami, FL, USA.
Vance P LemmonMiami Project to Cure Paralysis, University of Miami Miami, FL, USA ; Department of Neurological Surgery, Miller School of Medicine, University of Miami Miami, FL, USA ; Center for Computational Science, University of Miami, Coral Gables, FL USA.
José P SilvaCenter for Therapeutic Innovation and Department of Psychiatry and Behavioral Sciences, Miller School of Medicine, University of Miami Miami, FL, USA.
Claes WahlestedtCenter for Therapeutic Innovation and Department of Psychiatry and Behavioral Sciences, Miller School of Medicine, University of Miami Miami, FL, USA.
University of Miami · US

Funding

Comprehensive analysis of the FMR1 locus transcriptional landscapeR01MH084880 · NIMH · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI WAHLESTEDT, CLAES ROBERT · 2010 to 2014
$2.0M
Novel Compounds That Overcome Glial Inhibition of Axonal RegenerationR01NS059866 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI BIXBY, JOHN L · 2009 to 2013
$1.7M
NIMH NIH HHS R01 MH084880NINDS NIH HHS R01 NS059866
6 · The paper itself

Abstract

CGG repeat expansions in the Fragile X mental retardation 1 (FMR1) gene are responsible for a family of associated disorders characterized by either intellectual disability and autism Fragile X Syndrome (FXS), or adult-onset neurodegeneration Fragile X-associated Tremor/Ataxia Syndrome. However, the FMR1 locus is complex and encodes several long non-coding RNAs, whose expression is altered by repeat expansion mutations. The role of these lncRNAs is thus far unknown; therefore we investigated the functionality of FMR4, which we previously identified. "Full"-length expansions of the FMR1 triplet repeat cause silencing of both FMR1 and FMR4, thus we are interested in potential loss-of-function that may add to phenotypic manifestation of FXS. Since the two transcripts do not exhibit cis-regulation of one another, we examined the potential for FMR4 to regulate target genes at distal genomic loci using gene expression microarrays. We identified FMR4-responsive genes, including the methyl-CpG-binding domain protein 4 (MBD4). Furthermore, we found that in differentiating human neural precursor cells, FMR4 expression is developmentally regulated in opposition to expression of both FMR1 (which is expected to share a bidirectional promoter with FMR4) and MBD4. We therefore propose that FMR4's function is as a gene-regulatory lncRNA and that this transcript may function in normal development. Closer examination of FMR4 increases our understanding of the role of regulatory lncRNA and the consequences of FMR1 repeat expansions.

Indexed as

chromatin remodelingdifferentiationepigeneticsFMR4Fragile Xintellectual disabilitylncRNAMBD4

Identifiers

PMID26322075
PMCPMC4530595
OpenAlexW1716301446

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.