Evidence map›Paper›PMID 26322072›Full record

ArticleFrontiers in plant science2015

Host and non-host roots in rice: cellular and molecular approaches reveal differential responses to arbuscular mycorrhizal fungi.

Valentina Fiorilli, Marta Vallino, Chiara Biselli, Antonella Faccio, Paolo Bagnaresi, Paola Bonfante

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
13.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 88 citations in OpenAlex.

  1. Review
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  5. The receptor-like kinase ARK controls symbiotic balance across land plants.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  7. Review
  8. Review
  9. Article
  10. Review
  11. Zaxinone synthase controls arbuscular mycorrhizal colonization level in rice.The Plant journal : for cell and molecular biology · 2022
    Article
  12. Article
  13. Review
  14. Dual Roles ofFrontiers in plant science · 2022
    Article
  15. Review
  16. Article
  17. Article
  18. Plant apocarotenoids: from retrograde signaling to interspecific communication.The Plant journal : for cell and molecular biology · 2021
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Valentina FiorilliDepartment of Life Sciences and System Biology, University of Turin Turin, Italy ; Institute for Sustainable Plant Protection-National Research Council Turin, Italy.
Marta VallinoInstitute for Sustainable Plant Protection-National Research Council Turin, Italy.
Chiara BiselliGenomics Research Centre - Consiglio per la Ricerca e la Sperimentazione in Agricoltura Fiorenzuola d'Arda, Italy.
Antonella FaccioInstitute for Sustainable Plant Protection-National Research Council Turin, Italy.
Paolo BagnaresiGenomics Research Centre - Consiglio per la Ricerca e la Sperimentazione in Agricoltura Fiorenzuola d'Arda, Italy.
Paola BonfanteDepartment of Life Sciences and System Biology, University of Turin Turin, Italy.
Centro di Ricerca per l’Orticoltura · ITNational Research Council · ITInstitute for Sustainable Plant Protection · ITUniversity of Turin · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Oryza sativa, a model plant for Arbuscular Mycorrhizal (AM) symbiosis, has both host and non-host roots. Large lateral (LLR) and fine lateral (FLR) roots display opposite responses: LLR support AM colonization, but FLR do not. Our research aimed to study the molecular, morphological and physiological aspects related to the non-host behavior of FLR. RNA-seq analysis revealed that LLR and FLR displayed divergent expression profiles, including changes in many metabolic pathways. Compared with LLR, FLR showed down-regulation of genes instrumental for AM establishment and gibberellin signaling, and a higher expression of nutrient transporters. Consistent with the transcriptomic data, FLR had higher phosphorus content. Light and electron microscopy demonstrated that, surprisingly, in the Selenio cultivar, FLR have a two-layered cortex, which is theoretically compatible with AM colonization. According to RNA-seq, a gibberellin inhibitor treatment increased anticlinal divisions leading to a higher number of cortex cells in FLR. We propose that some of the differentially regulated genes that lead to the anatomical and physiological properties of the two root types also function as genetic factors regulating fungal colonization. The rice root apparatus offers a unique tool to study AM symbiosis, allowing direct comparisons of host and non-host roots in the same individual plant.

Indexed as

arbuscular mycorrhizal symbiosislateral rootOryza sativaRNA-seqroot apparatus

Identifiers

PMID26322072
PMCPMC4534827
OpenAlexW1638247557

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.