Evidence map›Paper›PMID 26321772›Full record

ArticleEvolutionary biology2015

Correlations Between the Morphology of Sonic Hedgehog Expression Domains and Embryonic Craniofacial Shape.

Qiuping Xu, Heather Jamniczky, Diane Hu, Rebecca M Green, Ralph S Marcucio, Benedikt Hallgrimsson, Washington Mio

Abstract read
In one paragraph

Article in Evolutionary biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Review
  3. Creating Avian Forebrain Chimeras to assess Facial Development.Journal of visualized experiments : JoVE · 2021
    Article
  4. Frontiers in cell and developmental biology · 2021
    Article
  5. The developmental-genetics of canalization.Seminars in cell & developmental biology · 2019
    Review
  6. Article
  7. Neural crest and the origin of species-specific pattern.Genesis (New York, N.Y. : 2000) · 2018
    Review
  8. Article
  9. Signals from the brain induce variation in avian facial shape.Developmental dynamics : an official publication of the American Association of Anatomists · 2015
    Article
  10. Morphometrics, 3D Imaging, and Craniofacial Development.Current topics in developmental biology · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Qiuping XuDepartment of Mathematics, Florida State University, Tallahassee, FL 32306-4510 USA.
Heather JamniczkyDepartment of Cell Biology and Anatomy and the Alberta Children's Hospital Research Institute, University of Calgary, Alberta, Canada.
Diane HuDepartment of Orthopedics, University of California, San Francisco, CA 94143 USA.
Rebecca M GreenDepartment of Cell Biology and Anatomy and the Alberta Children's Hospital Research Institute, University of Calgary, Alberta, Canada.
Ralph S MarcucioDepartment of Orthopedics, University of California, San Francisco, CA 94143 USA.
Benedikt HallgrimssonDepartment of Cell Biology and Anatomy and the Alberta Children's Hospital Research Institute, University of Calgary, Alberta, Canada.
Washington MioDepartment of Mathematics, Florida State University, Tallahassee, FL 32306-4510 USA.

Funding

The role of continuous phenotypic variation in structural defects of the faceR01DE019638 · NIDCR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Benedikt Hallgrimsson, Ralph S Marcucio · 2010 to 2026
$7.3M
MOLECULAR BASIS OF TISSUE INTERACTIONS THAT REGULATE CRANIOFACIAL DEVELOPMENTR01DE018234 · NIDCR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MARCUCIO, RALPH S · 2007 to 2017
$3.5M
Developmental mechanisms underlying genotype-phenotype correlationsR01DE021708 · NIDCR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HALLGRIMSSON, BENEDIKT, MARCUCIO, RALPH S · 2011 to 2015
$1.9M
Genetic and Morphometric Analysis of Facial CleftsF31DE022214 · NIDCR · UNIVERSITY OF COLORADO DENVER · PI GREEN, REBECCA MICHELLE · 2012 to 2014
$87k
NIDCR NIH HHS F31 DE022214NIDCR NIH HHS R01 DE018234NIDCR NIH HHS R01 DE019638NIDCR NIH HHS R01 DE021708
6 · The paper itself

Abstract

Quantitative analysis of gene expression domains and investigation of relationships between gene expression and developmental and phenotypic outcomes are central to advancing our understanding of the genotype-phenotype map. Gene expression domains typically have smooth but irregular shapes lacking homologous landmarks, making it difficult to analyze shape variation with the tools of landmark-based geometric morphometrics. In addition, 3D image acquisition and processing introduce many artifacts that further exacerbate the problem. To overcome these difficulties, this paper presents a method that combines optical projection tomography scanning, a shape regularization technique and a landmark-free approach to quantify variation in the morphology of Sonic hedgehog expression domains in the frontonasal ectodermal zone (FEZ) of avians and investigate relationships with embryonic craniofacial shape. The model reveals axes in FEZ and embryonic-head morphospaces along which variation exhibits a sharp linear relationship at high statistical significance. The technique should be applicable to analyses of other 3D biological structures that can be modeled as smooth surfaces and have ill-defined shape.

Indexed as

facial shapefrontonasal ectodermal zone (FEZ)gene expression domainsgenotype-phenotype mapSonic hedgehog

Identifiers

PMID26321772
PMCPMC4548935

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.