Evidence map›Paper›PMID 26320630›Full record

ArticleMolecular immunology2015

Studies of the TLR4-associated protein MD-2 using yeast-display and mutational analyses.

Daiva M Mattis, Adam S Chervin, Diana R Ranoa, Stacy L Kelley, Richard I Tapping, David M Kranz

Abstract read
In one paragraph

Article in Molecular immunology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Daiva M MattisDepartment of Biochemistry, University of Illinois, Urbana, IL 61801, USA.
Adam S ChervinDepartment of Biochemistry, University of Illinois, Urbana, IL 61801, USA.
Diana R RanoaDepartment of Microbiology, University of Illinois, Urbana, IL 61801, USA.
Stacy L KelleyDepartment of Microbiology, University of Illinois, Urbana, IL 61801, USA.
Richard I TappingDepartment of Microbiology, University of Illinois, Urbana, IL 61801, USA.
David M KranzDepartment of Biochemistry, University of Illinois, Urbana, IL 61801, USA. Electronic address: d-kranz@illinois.edu.
University of Illinois Urbana-Champaign · US

Funding

Analysis and engineering of MD-2 and related proteins from common allergensR21AI094037 · NIAID · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI KRANZ, DAVID M. · 2011 to 2012
$424k
Engineering Soluble T Cell Receptors to Treat Exotoxin Induced Pulmonary DiseaseF30HL096352 · NHLBI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI MATTIS, DAIVA MARIA · 2009 to 2014
$278k
NHLBI NIH HHS F30 HL096352NHLBI NIH HHS F30-HL096352NIAID NIH HHS R21 AI094037NIAID NIH HHS R21-AI094037
6 · The paper itself

Abstract

Bacterial lipopolysaccharide (LPS) activates the innate immune system by forming a complex with myeloid differentiation factor 2 (MD-2) and Toll-like receptor 4 (TLR4), which is present on antigen presenting cells. MD-2 plays an essential role in this activation of the innate immune system as a member of the ternary complex, TLR4:MD-2:LPS. With the goal of further understanding the molecular details of the interaction of MD-2 with LPS and TLR4, and possibly toward engineering dominant negative regulators of the MD-2 protein, here we subjected MD-2 to a mutational analysis using yeast display. The approach included generation of site-directed alanine mutants, and ligand-driven selections of MD-2 mutant libraries. Our findings showed that: (1) proline mutations in the F119-K132 loop that binds LPS were strongly selected for enhanced yeast surface stability, (2) there was a preference for positive-charged side chains (R/K) at residue 120 for LPS binding, and negative-charged side chains (D/E) for TLR4 binding, (3) aromatic residues were strongly preferred at F119 and F121 for LPS binding, and (4) an MD-2 mutant (T84N/D101A/S118A/S120D/K122P) exhibited increased binding to TLR4 but decreased binding to LPS. These studies revealed the impact of specific residues and regions of MD-2 on the binding of LPS and TLR4, and they provide a framework for further directed evolution of the MD-2 protein.

Indexed as

Amino Acid SequenceBinding SitesGene ExpressionHumansImmunity, InnateLipopolysaccharidesLymphocyte Antigen 96Models, MolecularMolecular Sequence DataMutagenesis, Site-DirectedMutationPeptide LibraryProtein BindingProtein Structure, SecondaryProtein Structure, TertiaryRecombinant ProteinsLipopolysaccharidesLY96 protein, humanLymphocyte Antigen 96Peptide LibraryRecombinant ProteinsTLR4 protein, humanToll-Like Receptor 4LipopolysaccharideMD-2Toll-like receptor-4Yeast display

Identifiers

PMID26320630
PMCPMC4623992
OpenAlexW1729485357

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.