Evidence map›Paper›PMID 26320211›Full record

ArticleMolecular & cellular proteomics : MCP2015

Proteomic and Biochemical Studies of Lysine Malonylation Suggest Its Malonic Aciduria-associated Regulatory Role in Mitochondrial Function and Fatty Acid Oxidation.

Gozde Colak, Olga Pougovkina, Lunzhi Dai, Minjia Tan, Heleen Te Brinke, He Huang, Zhongyi Cheng, Jeongsoon Park, Xuelian Wan, Xiaojing Liu and 6 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 86 papers.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed
9.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

86 citing papers in PubMed, 194 citations in OpenAlex.

  1. Article
  2. Article
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  4. Article
  5. Review
  6. Article
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  8. Article
  9. Review
  10. Animals : an open access journal from MDPI · 2025
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Histone acylation at a glance.Journal of cell science · 2024
    Review
  17. Article
  18. Review
  19. Impact of Lysine Succinylation on the Biology of Fungi.Current issues in molecular biology · 2024
    Review
  20. Mitochondrial proteome research: the road ahead.Nature reviews. Molecular cell biology · 2024
    Review

26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 5 countries.

Gozde ColakFrom the Ben May Department of Cancer Research, University of Chicago, Chicago, Illinois 60637.
Olga PougovkinaLaboratory of Genetic Metabolic Diseases, Department of Clinical Chemistry and.
Lunzhi DaiFrom the Ben May Department of Cancer Research, University of Chicago, Chicago, Illinois 60637.
Minjia TanState Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai 201203, China.
Heleen Te BrinkeLaboratory of Genetic Metabolic Diseases, Department of Clinical Chemistry and.
He HuangFrom the Ben May Department of Cancer Research, University of Chicago, Chicago, Illinois 60637.
Zhongyi ChengPTM Biolabs, Chicago, Illinois 60612.
Jeongsoon ParkDepartment of Pathology and Institute of Gerontology, University of Michigan, Ann Arbor, Michigan 48109.
Xuelian WanState Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai 201203, China.
Xiaojing LiuDivision of Nutritional Sciences, Cornell University, Ithaca, New York 14853, and.
Wyatt W YueStructural Genomics Consortium, University of Oxford, Oxford OX3 7DQ, United Kingdom.
Ronald J A WandersLaboratory of Genetic Metabolic Diseases, Department of Clinical Chemistry and Department of Pediatrics, Emma's Children Hospital, Academic Medical Center, University of Amsterdam, Meibergdreef 9, 1105 AZ Amsterdam, The Netherlands.
Jason W LocasaleDivision of Nutritional Sciences, Cornell University, Ithaca, New York 14853, and.
David B LombardDepartment of Pathology and Institute of Gerontology, University of Michigan, Ann Arbor, Michigan 48109.
Vincent C J de BoerLaboratory of Genetic Metabolic Diseases, Department of Clinical Chemistry and Department of Pediatrics, Emma's Children Hospital, Academic Medical Center, University of Amsterdam, Meibergdreef 9, 1105 AZ Amsterdam, The Netherlands, v.c.deboer@amc.uva.nl.
Yingming ZhaoFrom the Ben May Department of Cancer Research, University of Chicago, Chicago, Illinois 60637, State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai 201203, China, yingming.zhao@uchicago.edu.
University of Chicago · USLaboratory of Molecular Genetics · PLChinese Academy of Sciences · CNCornell University · USUniversity of Michigan–Ann Arbor · USAcademic Medical Center · NLGenomics (United Kingdom) · GB

Funding

Regional Pilot And Feasibility Study Grants ProgramP30DK020572 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Mehboob A Hussain · 2013 to 2026
$24.3M
Research Training in BiogerontologyT32AG000114 · NIA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SCOTT PLETCHER · 1985 to 2026
$12.4M
Proteome Characterization Center: A Genoproteomics Pipeline for Cance ResearchU24CA160036 · NCI · JOHNS HOPKINS UNIVERSITY · PI CHAN, DANIEL WANYUI, ZHANG, HUI · 2011 to 2016
$10.7M
Regulation of one carbon metabolism and epigenetics by SIRT5R01GM101171 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LOMBARD, DAVID BENNER · 2012 to 2021
$2.6M
Biochemistry of lysine crotonylation pathwayR01GM105933 · NIGMS · UNIVERSITY OF CHICAGO · PI ZHAO, YINGMING · 2013 to 2016
$1.7M
Understanding metabolic flux and the control of mammalian cell growthR00CA168997 · NCI · DUKE UNIVERSITY · PI LOCASALE, JASON W. · 2013 to 2015
$695k
Mechanisms of tumor suppression by the chromatin deacetylase SIRT6R21CA177925 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LOMBARD, DAVID BENNER · 2013 to 2014
$362k
NCI NIH HHS CA160036NCI NIH HHS R00 CA168997NCI NIH HHS R00CA168997NCI NIH HHS R21 CA177925NCI NIH HHS U24 CA160036NIA NIH HHS T32 AG000114NIA NIH HHS T32-AG000114NIDDK NIH HHS P30 DK020572NIGMS NIH HHS GM105933NIGMS NIH HHS R01 GM101171NIGMS NIH HHS R01GM101171NIGMS NIH HHS R01 GM105933Telethon GTB12001Wellcome Trust 106169
6 · The paper itself

Abstract

The protein substrates of sirtuin 5-regulated lysine malonylation (Kmal) remain unknown, hindering its functional analysis. In this study, we carried out proteomic screening, which identified 4042 Kmal sites on 1426 proteins in mouse liver and 4943 Kmal sites on 1822 proteins in human fibroblasts. Increased malonyl-CoA levels in malonyl-CoA decarboxylase (MCD)-deficient cells induces Kmal levels in substrate proteins. We identified 461 Kmal sites showing more than a 2-fold increase in response to MCD deficiency as well as 1452 Kmal sites detected only in MCD-/- fibroblast but not MCD+/+ cells, suggesting a pathogenic role of Kmal in MCD deficiency. Cells with increased lysine malonylation displayed impaired mitochondrial function and fatty acid oxidation, suggesting that lysine malonylation plays a role in pathophysiology of malonic aciduria. Our study establishes an association between Kmal and a genetic disease and offers a rich resource for elucidating the contribution of the Kmal pathway and malonyl-CoA to cellular physiology and human diseases.

Indexed as

AnimalsCarboxy-LyasesCell LineFatty AcidsFibroblastsHumansLiverLysineMaleMalonatesMalonyl Coenzyme AMetabolism, Inborn ErrorsMethylmalonic AcidMiceMice, KnockoutMitochondriaCarboxy-LyasesFatty AcidsLysineMalonatesmalonic acidmalonyl-CoA decarboxylaseMalonyl Coenzyme AMethylmalonic AcidSIRT5 protein, mouseSirtuins

Identifiers

PMID26320211
PMCPMC4638046
OpenAlexW2119861196

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.