Evidence map›Paper›PMID 26320192›Full record

ArticleOncotarget2015

Methylomics analysis identifies ZNF671 as an epigenetically repressed novel tumor suppressor and a potential non-invasive biomarker for the detection of urothelial carcinoma.

Chia-Ming Yeh, Pi-Che Chen, Hsiao-Yen Hsieh, Yeong-Chin Jou, Chang-Te Lin, Ming-Hsuan Tsai, Wen-Yu Huang, Yi-Ting Wang, Ru-Inn Lin, Szu-Shan Chen and 6 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 50 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 1 country.

Chia-Ming YehDepartment of Life Science, National Chung Cheng University, Min-Hsiung, Chia-Yi, Taiwan.
Pi-Che ChenDepartment of Urology, Ditmanson Medical Foundation Chia-Yi Christian Hospital, Chia-Yi, Taiwan.
Hsiao-Yen HsiehInstitute of Molecular Biology, National Chung Cheng University, Min-Hsiung, Chia-Yi, Taiwan.
Yeong-Chin JouDepartment of Urology, Ditmanson Medical Foundation Chia-Yi Christian Hospital, Chia-Yi, Taiwan.
Chang-Te LinDepartment of Urology, Ditmanson Medical Foundation Chia-Yi Christian Hospital, Chia-Yi, Taiwan.
Ming-Hsuan TsaiDepartment of Life Science, National Chung Cheng University, Min-Hsiung, Chia-Yi, Taiwan.
Wen-Yu HuangDepartment of Life Science, National Chung Cheng University, Min-Hsiung, Chia-Yi, Taiwan.
Yi-Ting WangDepartment of Life Science, National Chung Cheng University, Min-Hsiung, Chia-Yi, Taiwan.
Ru-Inn LinDepartment of Life Science, National Chung Cheng University, Min-Hsiung, Chia-Yi, Taiwan.
Szu-Shan ChenDepartment of Life Science, National Chung Cheng University, Min-Hsiung, Chia-Yi, Taiwan.
Chun-Liang TungDepartment of Pathology, Ditmanson Medical Foundation Chia-Yi Christian Hospital, Chia-Yi, Taiwan.
Shu-Fen WuDepartment of Life Science, National Chung Cheng University, Min-Hsiung, Chia-Yi, Taiwan.
D Ching ChangDepartment of Life Science, National Chung Cheng University, Min-Hsiung, Chia-Yi, Taiwan.
Cheng-Huang ShenDepartment of Urology, Ditmanson Medical Foundation Chia-Yi Christian Hospital, Chia-Yi, Taiwan.
Cheng-Da HsuDepartment of Medical Research, Ditmanson Medical Foundation Chia-Yi Christian Hospital, Chia-Yi, Taiwan.
Michael W Y ChanDepartment of Life Science, National Chung Cheng University, Min-Hsiung, Chia-Yi, Taiwan.
National Chung Cheng University · TWChia-Yi Christian Hospital · TWBuddhist Tzu Chi General Hospital · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The molecular mechanism underlying the lethal phenomenon of urothelial carcinoma (UC) tumor recurrence remains unresolved. Here, by methylation microarray, we identified promoter methylation of the zinc-finger protein gene, ZNF671 in bladder UC tumor tissue samples, a finding that was independently validated by bisulphite pyrosequencing in cell lines and tissue samples. Subsequent assays including treatment with epigenetic depressive agents and in vitro methylation showed ZNF671 methylation to result in its transcriptional repression. ZNF671 re-expression in UC cell lines, via ectopic expression, inhibited tumor growth and invasion, in possible conjunction with downregulation of cancer stem cell markers (c-KIT, NANOG, OCT4). Clinically, high ZNF671 methylation in UC tumor tissues (n=96; 63 bladder, 33 upper urinary tract) associated with tumor grade and poor locoregional disease-free survival. Quantitative MSP analysis in a training (n=97) and test (n=61) sets of voided urine samples from bladder UC patients revealed a sensitivity and specificity of 42%-48% and 89%-92.8%, respectively, for UC cancer detection. Moreover, combining DNA methylation of ZNF671 and 2 other genes (IRF8 and sFRP1) further increased the sensitivity to 96.2%, suggesting a possible three-gene UC biomarker. In summary, ZNF671, an epigenetically silenced novel tumor suppressor, represents a potential predictor for UC relapse and non-invasive biomarker that could assist in UC clinical decision-making.

Indexed as

DNA MethylationAnimalsBiomarkers, TumorCarcinoma, Transitional CellCell Line, TumorDNA, NeoplasmEpigenesis, GeneticFemaleGene Expression Regulation, NeoplasticHumansMaleMice, Inbred BALB CMice, NudeMiddle AgedReverse Transcriptase Polymerase Chain ReactionSequence Analysis, DNABiomarkers, TumorDNA, NeoplasmTumor Suppressor ProteinsZNF671 protein, humanDNA methylationurineurothelial carcinomaZNF671

Identifiers

PMID26320192
PMCPMC4745746
OpenAlexW1924694174

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.