Evidence map›Paper›PMID 26320097›Full record

ArticleGenetics2015

The Transgenic RNAi Project at Harvard Medical School: Resources and Validation.

Lizabeth A Perkins, Laura Holderbaum, Rong Tao, Yanhui Hu, Richelle Sopko, Kim McCall, Donghui Yang-Zhou, Ian Flockhart, Richard Binari, Hye-Seok Shim and 30 more

Abstract readValidation Study
In one paragraph

Article in Genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 418 papers.

0numbers the graph read from it
0cells of the map it votes in
418citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

418 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. ATP synthase subunits e and g are essential for CaCell death and differentiation · 2026
    Article
  7. Article
  8. eLife · 2026
    Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

358 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

40 authors.

Lizabeth A PerkinsDepartment of Genetics, Harvard Medical School, Boston, Massachusetts 02115.
Laura HolderbaumDepartment of Genetics, Harvard Medical School, Boston, Massachusetts 02115.
Rong TaoDepartment of Genetics, Harvard Medical School, Boston, Massachusetts 02115.
Yanhui HuDepartment of Genetics, Harvard Medical School, Boston, Massachusetts 02115.
Richelle SopkoDepartment of Genetics, Harvard Medical School, Boston, Massachusetts 02115.
Kim McCallBoston University, Boston, Massachusetts 02215.
Donghui Yang-ZhouDepartment of Genetics, Harvard Medical School, Boston, Massachusetts 02115.
Ian FlockhartDepartment of Genetics, Harvard Medical School, Boston, Massachusetts 02115.
Richard BinariDepartment of Genetics, Harvard Medical School, Boston, Massachusetts 02115 Howard Hughes Medical Institute, Boston, Massachusetts 02115.
Hye-Seok ShimDepartment of Genetics, Harvard Medical School, Boston, Massachusetts 02115.
Audrey MillerDepartment of Genetics, Harvard Medical School, Boston, Massachusetts 02115.
Amy HousdenDepartment of Genetics, Harvard Medical School, Boston, Massachusetts 02115.
Marianna FoosDepartment of Genetics, Harvard Medical School, Boston, Massachusetts 02115.
Sakara RandkelvDepartment of Genetics, Harvard Medical School, Boston, Massachusetts 02115.
Colleen KelleyDepartment of Genetics, Harvard Medical School, Boston, Massachusetts 02115.
Pema NamgyalDepartment of Genetics, Harvard Medical School, Boston, Massachusetts 02115.
Christians VillaltaDepartment of Genetics, Harvard Medical School, Boston, Massachusetts 02115 Howard Hughes Medical Institute, Boston, Massachusetts 02115.
Lu-Ping LiuDepartment of Genetics, Harvard Medical School, Boston, Massachusetts 02115 TsingHua Fly Center, Beijing, 100084, China.
Xia JiangTsingHua Fly Center, Beijing, 100084, China.
Qiao Huan-HuanTsingHua Fly Center, Beijing, 100084, China.
Xia WangTsingHua Fly Center, Beijing, 100084, China.
Asao FujiyamaComparative Genomics Laboratory, National Institute of Genetics, Shizuoka 411-8540, Japan.
Atsushi ToyodaComparative Genomics Laboratory, National Institute of Genetics, Shizuoka 411-8540, Japan.
Kathleen AyersDepartment of Genetics, Yale University, New Haven, Connecticut 06510.
Allison BlumHoward Hughes Medical Institute, Boston, Massachusetts 02115 Skirball Institute, Department of Cell Biology, New York University School of Medicine, New York, New York 10016.
Benjamin CzechCRUK Cambridge Institute, University of Cambridge, Cambridge, CB2 1TN, United Kingdom.
Ralph NeumullerDepartment of Genetics, Harvard Medical School, Boston, Massachusetts 02115.
Dong YanDepartment of Genetics, Harvard Medical School, Boston, Massachusetts 02115.
Amanda CavallaroHoward Hughes Medical Institute, Boston, Massachusetts 02115 Janelia Farm Research Institute ,Asburn, Virginia, 20147.
Karen HibbardHoward Hughes Medical Institute, Boston, Massachusetts 02115 Janelia Farm Research Institute ,Asburn, Virginia, 20147.
Don HallHoward Hughes Medical Institute, Boston, Massachusetts 02115 Janelia Farm Research Institute ,Asburn, Virginia, 20147.
Lynn CooleyDepartment of Genetics, Yale University, New Haven, Connecticut 06510.
Gregory J HannonCRUK Cambridge Institute, University of Cambridge, Cambridge, CB2 1TN, United Kingdom.
Ruth LehmannHoward Hughes Medical Institute, Boston, Massachusetts 02115 Skirball Institute, Department of Cell Biology, New York University School of Medicine, New York, New York 10016.
Annette ParksBloomington Drosophila Stock Center Bloomington, Indiana, 47405.
Stephanie E MohrDepartment of Genetics, Harvard Medical School, Boston, Massachusetts 02115.
Ryu UedaComparative Genomics Laboratory, National Institute of Genetics, Shizuoka 411-8540, Japan.
Shu KondoDepartment of Genetics, Harvard Medical School, Boston, Massachusetts 02115 Invertebrate Genetics Laboratory, National Institute of Genetics, Shizuoka 411-8540, Japan.
Jian-Quan NiDepartment of Genetics, Harvard Medical School, Boston, Massachusetts 02115 TsingHua Fly Center, Beijing, 100084, China.
Norbert PerrimonDepartment of Genetics, Harvard Medical School, Boston, Massachusetts 02115 Howard Hughes Medical Institute, Boston, Massachusetts 02115 perrimon@receptor.med.harvard.edu.

Funding

New collections of dsRNAs and overexpression miRNA constructs to supplement RNAiR01GM067761 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI PERRIMON, NORBERT · 2003 to 2019
$15.5M
Resource Component: Acquisition, maintenance and distribution of Drosophila stocksP40OD018537 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI Annette L. Parks · 2014 to 2026
$13.5M
OOCYTE DEVELOPMENT IN DROSOPHILAR01GM043301 · NIGMS · YALE UNIVERSITY · PI COOLEY, LYNN · 1990 to 2020
$10.7M
Drosophila Transgenic RNAi Resource ProjectR01GM084947 · NIGMS · HARVARD MEDICAL SCHOOL · PI PERRIMON, NORBERT · 2008 to 2019
$9.8M
Programmed Cell Death in Drosophila DevelopmentR01GM060574 · NIGMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI MCCALL, KIMBERLY A · 2001 to 2016
$4.5M
Germ Cell Migration in Drosophila.R37HD041900 · NICHD · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI LEHMANN, RUTH · 2013 to 2021
$2.6M
Roles of small RNAs in guarding germ cell genomesR37GM062534 · NIGMS · NEW YORK GENOME CENTER · PI HANNON, GREGORY J · 2013 to 2017
$2.0M
Mechanisms of cell corpse clearanceR01GM094452 · NIGMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI MCCALL, KIMBERLY A · 2011 to 2014
$1.3M
Development of Validated Drosophila in vivo RNAi Models of Human DiseasesR24RR032668 · NCRR · HARVARD MEDICAL SCHOOL · PI PERRIMON, NORBERT · 2011 to 2011
$440k
STRUCTURE-FUNCTION OF STEROIDOGENIC CYTOCHROMES P-450R01HD014900 · NICHD · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI SHIVELY, JOHN E. · 1985 to 1990
–
Cancer Research UK 21143NCRR NIH HHS R24 RR032668NCRR NIH HHS R24RR032668NICHD NIH HHS R01HD14900-09NICHD NIH HHS R37 HD041900NIGMS NIH HHS R01 GM043301NIGMS NIH HHS R01GM043301NIGMS NIH HHS R01 GM060574NIGMS NIH HHS R01GM060574NIGMS NIH HHS R01 GM067761NIGMS NIH HHS R01GM067761NIGMS NIH HHS R01 GM084947NIGMS NIH HHS R01GM084947NIGMS NIH HHS R01 GM094452NIGMS NIH HHS R01GM094452NIGMS NIH HHS R37 GM062534NIGMS NIH HHS R37GM062534NIH HHS P40 OD018537NIH HHS P40OD018537
6 · The paper itself

Abstract

To facilitate large-scale functional studies in Drosophila, the Drosophila Transgenic RNAi Project (TRiP) at Harvard Medical School (HMS) was established along with several goals: developing efficient vectors for RNAi that work in all tissues, generating a genome-scale collection of RNAi stocks with input from the community, distributing the lines as they are generated through existing stock centers, validating as many lines as possible using RT-qPCR and phenotypic analyses, and developing tools and web resources for identifying RNAi lines and retrieving existing information on their quality. With these goals in mind, here we describe in detail the various tools we developed and the status of the collection, which is currently composed of 11,491 lines and covering 71% of Drosophila genes. Data on the characterization of the lines either by RT-qPCR or phenotype is available on a dedicated website, the RNAi Stock Validation and Phenotypes Project (RSVP, http://www.flyrnai.org/RSVP.html), and stocks are available from three stock centers, the Bloomington Drosophila Stock Center (United States), National Institute of Genetics (Japan), and TsingHua Fly Center (China).

Indexed as

RNA InterferenceAccess to InformationAnimalsAnimals, Genetically ModifiedBiomedical ResearchBostonDrosophilaGenes, InsectGenetic VectorsSchools, MedicalDrosophilafunctional genomicsphenotypesRNAiscreens

Identifiers

PMID26320097
PMCPMC4649654

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.