Evidence map›Paper›PMID 26319878›Full record

ArticleApplied and environmental microbiology2015

γ-Resorcylate catabolic-pathway genes in the soil actinomycete Rhodococcus jostii RHA1.

Daisuke Kasai, Naoto Araki, Kota Motoi, Shota Yoshikawa, Toju Iino, Shunsuke Imai, Eiji Masai, Masao Fukuda

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.1field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. The Hydroxyquinol Degradation Pathway in Rhodococcus jostii RHA1 andApplied and environmental microbiology · 2020
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Daisuke KasaiDepartment of Bioengineering, Nagaoka University of Technology, Nagaoka, Niigata, Japan.
Naoto ArakiDepartment of Bioengineering, Nagaoka University of Technology, Nagaoka, Niigata, Japan.
Kota MotoiDepartment of Bioengineering, Nagaoka University of Technology, Nagaoka, Niigata, Japan.
Shota YoshikawaDepartment of Bioengineering, Nagaoka University of Technology, Nagaoka, Niigata, Japan.
Toju IinoDepartment of Bioengineering, Nagaoka University of Technology, Nagaoka, Niigata, Japan.
Shunsuke ImaiDepartment of Bioengineering, Nagaoka University of Technology, Nagaoka, Niigata, Japan.
Eiji MasaiDepartment of Bioengineering, Nagaoka University of Technology, Nagaoka, Niigata, Japan.
Masao FukudaDepartment of Bioengineering, Nagaoka University of Technology, Nagaoka, Niigata, Japan masao@vos.nagaokaut.ac.jp.
Nagaoka University of Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Rhodococcus jostii RHA1 gene cluster required for γ-resorcylate (GRA) catabolism was characterized. The cluster includes tsdA, tsdB, tsdC, tsdD, tsdR, tsdT, and tsdX, which encode GRA decarboxylase, resorcinol 4-hydroxylase, hydroxyquinol 1,2-dioxygenase, maleylacetate reductase, an IclR-type regulator, a major facilitator superfamily transporter, and a putative hydrolase, respectively. The tsdA gene conferred GRA decarboxylase activity on Escherichia coli. Purified TsdB oxidized NADH in the presence of resorcinol, suggesting that tsdB encodes a unique NADH-specific single-component resorcinol 4-hydroxylase. Mutations in either tsdA or tsdB resulted in growth deficiency on GRA. The tsdC and tsdD genes conferred hydroxyquinol 1,2-dioxygenase and maleylacetate reductase activities, respectively, on E. coli. Inactivation of tsdT significantly retarded the growth of RHA1 on GRA. The growth retardation was partially suppressed under acidic conditions, suggesting the involvement of tsdT in GRA uptake. Reverse transcription-PCR analysis revealed that the tsd genes constitute three transcriptional units, the tsdBADC and tsdTX operons and tsdR. Transcription of the tsdBADC and tsdTX operons was induced during growth on GRA. Inactivation of tsdR derepressed transcription of the tsdBADC and tsdTX operons in the absence of GRA, suggesting that tsd gene transcription is negatively regulated by the tsdR-encoded regulator. Binding of TsdR to the tsdR-tsdB and tsdT-tsdR intergenic regions was inhibited by the addition of GRA, indicating that GRA interacts with TsdR as an effector molecule.

Indexed as

Soil MicrobiologyBiotransformationCloning, MolecularCulture MediaDNA, BacterialEscherichia coliGene DeletionGene Expression ProfilingMetabolic Networks and PathwaysMolecular Sequence DataMultigene FamilyResorcinolsReverse Transcriptase Polymerase Chain ReactionRhodococcusSequence Analysis, DNATranscription, GeneticCulture MediaDNA, BacterialResorcinols

Identifiers

PMID26319878
PMCPMC4592853
OpenAlexW2278683431

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.