Evidence map›Paper›PMID 26319176›Full record

ArticleArchives of biochemistry and biophysics2015

Functional importance of a peripheral pocket in mammalian cytochrome P450 2B enzymes.

Hyun-Hee Jang, Jingbao Liu, Ga-Young Lee, James R Halpert, P Ross Wilderman

Abstract read
In one paragraph

Article in Archives of biochemistry and biophysics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Hyun-Hee JangSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA 92093, United States.
Jingbao LiuDepartment of Pharmaceutical Sciences, University of Connecticut, Storrs, CT 06269, United States.
Ga-Young LeeSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA 92093, United States.
James R HalpertDepartment of Pharmaceutical Sciences, University of Connecticut, Storrs, CT 06269, United States.
P Ross WildermanDepartment of Pharmaceutical Sciences, University of Connecticut, Storrs, CT 06269, United States. Electronic address: ross.wilderman@uconn.edu.

Funding

STRUCTURAL BASIS OF SELECTIVE P-450 INACTIVATIONR01ES003619 · NIEHS · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI HALPERT, JAMES R · 1985 to 2016
$6.2M
NIEHS NIH HHS ES003619NIEHS NIH HHS R01 ES003619
6 · The paper itself

Abstract

The functional importance of a peripheral pocket found in previously published X-ray crystal structures of CYP2B4 and CYP2B6 was probed using a biophysical approach. Introduction of tryptophan within the pocket of CYP2B4 at F202 or I241 leads to marked impairment of 7-ethoxy-4-(trifluoromethyl)coumarin (7-EFC) or 7-benzyloxyresorufin O-dealkylation efficiency; a similar substitution at F195, near the surface access to the pocket, does not affect these activities. The analogous CYP2B6 F202W mutant is inactive in the 7-EFC O-dealkylation assay. The stoichiometry of 7-EFC deethylation suggested that the decreased activity of F202W and I241W in CYP2B4 and lack of activity of F202W in CYP2B6 coincided with a sharp increase in the flux of reducing equivalents through the oxidase shunt to produce excess water. The results indicate that the chemical identity of residues within this peripheral pocket, but not at the mouth of the pocket, is important in substrate turnover and redox coupling, likely through effects on active site topology.

Indexed as

Amino Acid SubstitutionAryl Hydrocarbon HydroxylasesCatalytic DomainCoumarinsCytochrome P-450 CYP2B6Cytochrome P450 Family 2HumansMutation, MissenseOxidation-Reduction7-ethoxy-4-trifluoromethylcoumarinAryl Hydrocarbon HydroxylasesCoumarinsCYP2B6 protein, humancytochrome P-450 CYP2B4 (rabbit)Cytochrome P-450 CYP2B6Cytochrome P450 Family 2Cytochrome P450Monooxygenase couplingSite-directed mutagenesisStructure–function relationship

Identifiers

PMID26319176
PMCPMC4599343

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.