Evidence map›Paper›PMID 26319015›Full record

ArticleNucleic acids research2015

Sumoylation of Sir2 differentially regulates transcriptional silencing in yeast.

Abdul Hannan, Neethu Maria Abraham, Siddharth Goyal, Imlitoshi Jamir, U Deva Priyakumar, Krishnaveni Mishra

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 28 citations in OpenAlex.

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  13. International journal of biological sciences · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Abdul HannanDepartment of Biochemistry, School of Life Sciences, University of Hyderabad, Hyderabad 500046, India.
Neethu Maria AbrahamDepartment of Biochemistry, School of Life Sciences, University of Hyderabad, Hyderabad 500046, India.
Siddharth GoyalCenter for Computational Natural Sciences and Bioinformatics, International Institute of Information Technology, Hyderabad 500032, India.
Imlitoshi JamirDepartment of Biochemistry, School of Life Sciences, University of Hyderabad, Hyderabad 500046, India.
U Deva PriyakumarCenter for Computational Natural Sciences and Bioinformatics, International Institute of Information Technology, Hyderabad 500032, India.
Krishnaveni MishraDepartment of Biochemistry, School of Life Sciences, University of Hyderabad, Hyderabad 500046, India kmsl@uohyd.ernet.in.
University of Hyderabad · INInternational Institute of Information Technology, Hyderabad · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Silent information regulator 2 (Sir2), the founding member of the conserved sirtuin family of NAD(+)-dependent histone deacetylase, regulates several physiological processes including genome stability, gene silencing, metabolism and life span in yeast. Within the nucleus, Sir2 is associated with telomere clusters in the nuclear periphery and rDNA in the nucleolus and regulates gene silencing at these genomic sites. How distribution of Sir2 between telomere and rDNA is regulated is not known. Here we show that Sir2 is sumoylated and this modification modulates the intra-nuclear distribution of Sir2. We identify Siz2 as the key SUMO ligase and show that multiple lysines in Sir2 are subject to this sumoylation activity. Mutating K215 alone counteracts the inhibitory effect of Siz2 on telomeric silencing. SUMO modification of Sir2 impairs interaction with Sir4 but not Net1 and, furthermore, SUMO modified Sir2 shows predominant nucleolar localization. Our findings demonstrate that sumoylation of Sir2 modulates distribution between telomeres and rDNA and this is likely to have implications for Sir2 function in other loci as well.

Indexed as

Gene Expression Regulation, FungalRNA InterferenceSumoylationCell NucleolusDNA, RibosomalLysineModels, MolecularMutationSaccharomyces cerevisiaeSilent Information Regulator Proteins, Saccharomyces cerevisiaeSirtuin 2Small Ubiquitin-Related Modifier ProteinsTelomereDNA, RibosomalLysineSilent Information Regulator Proteins, Saccharomyces cerevisiaeSIR2 protein, S cerevisiaeSIR4 protein, S cerevisiaeSirtuin 2Small Ubiquitin-Related Modifier Proteins

Identifiers

PMID26319015
PMCPMC4666389
OpenAlexW1936218981

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.