Evidence map›Paper›PMID 26318454›Full record

ArticleThe Journal of biological chemistry2015

Plasmodium Apicoplast Gln-tRNAGln Biosynthesis Utilizes a Unique GatAB Amidotransferase Essential for Erythrocytic Stage Parasites.

Boniface M Mailu, Ling Li, Jen Arthur, Todd M Nelson, Gowthaman Ramasamy, Karin Fritz-Wolf, Katja Becker, Malcolm J Gardner

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Boniface M MailuFrom the Center for Infectious Disease Research, Seattle, Washington 98109.
Ling LiFrom the Center for Infectious Disease Research, Seattle, Washington 98109.
Jen ArthurFrom the Center for Infectious Disease Research, Seattle, Washington 98109.
Todd M NelsonFrom the Center for Infectious Disease Research, Seattle, Washington 98109.
Gowthaman RamasamyFrom the Center for Infectious Disease Research, Seattle, Washington 98109.
Karin Fritz-Wolfthe Department of Biochemistry and Molecular Biology, Interdisciplinary Research Center, Justus Liebig University, Giessen 35392 Germany, and the Max-Planck Institute for Medical Research, Jahnstrasse 29, D-69120 Heidelberg, Germany.
Katja Beckerthe Department of Biochemistry and Molecular Biology, Interdisciplinary Research Center, Justus Liebig University, Giessen 35392 Germany, and.
Malcolm J GardnerFrom the Center for Infectious Disease Research, Seattle, Washington 98109, the Department of Global Health, University of Washington, Seattle, Washington 98195, mjgardner1@mac.com.
Center for Infectious Disease Research · USInfectious Disease Research Institute · USUniversity of Giessen · DEUniversity of Washington · US

Funding

Indirect aminoacylation in the Plasmodium apicoplastR21AI081097 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI GARDNER, MALCOLM JOHN · 2009 to 2010
$528k
NIAID NIH HHS R21 AI081097NIAID NIH HHS R21AI81097Wellcome Trust
6 · The paper itself

Abstract

The malaria parasite Plasmodium falciparum apicoplast indirect aminoacylation pathway utilizes a non-discriminating glutamyl-tRNA synthetase to synthesize Glu-tRNA(Gln) and a glutaminyl-tRNA amidotransferase to convert Glu-tRNA(Gln) to Gln-tRNA(Gln). Here, we show that Plasmodium falciparum and other apicomplexans possess a unique heterodimeric glutamyl-tRNA amidotransferase consisting of GatA and GatB subunits (GatAB). We localized the P. falciparum GatA and GatB subunits to the apicoplast in blood stage parasites and demonstrated that recombinant GatAB converts Glu-tRNA(Gln) to Gln-tRNA(Gln) in vitro. We demonstrate that the apicoplast GatAB-catalyzed reaction is essential to the parasite blood stages because we could not delete the Plasmodium berghei gene encoding GatA in blood stage parasites in vivo. A phylogenetic analysis placed the split between Plasmodium GatB, archaeal GatE, and bacterial GatB prior to the phylogenetic divide between bacteria and archaea. Moreover, Plasmodium GatA also appears to have emerged prior to the bacterial-archaeal phylogenetic divide. Thus, although GatAB is found in Plasmodium, it emerged prior to the phylogenetic separation of archaea and bacteria.

Indexed as

AntimalarialsApicoplastsCell NucleusComputational BiologyErythrocytesGATA Transcription FactorsGene DeletionGreen Fluorescent ProteinsHumansMalariaModels, MolecularNitrogenous Group TransferasesPhylogenyPlasmodium falciparumProtein Structure, TertiaryProtozoan ProteinsAntimalarialsGATA Transcription Factorsglutamyl-tRNA(Gln)Green Fluorescent ProteinsNitrogenous Group TransferasesProtozoan ProteinsRecombinant ProteinsRNA, Transfer, Amino AcylRNA, Transfer, Glnapicoplastglutamyl-tRNA amidotransferaseglutamyl-tRNA synthetasemalarianucleic acidnucleic acid enzymologyplasmodiumtransfer RNA (tRNA)

Identifiers

PMID26318454
PMCPMC4705961
OpenAlexW1865915827

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.