Evidence map›Paper›PMID 26318174›Full record

ArticleVirus genes2015

A coiled-coil motif in non-structural protein 3 (NS3) of bluetongue virus forms an oligomer.

Nirmal Chacko, Nihar Nalini Mohanty, Sanchay Kumar Biswas, Karam Chand, Revanaiah Yogisharadhya, Awadh Bihari Pandey, Bimalendu Mondal, Sathish Bhadravati Shivachandra

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Article in Virus genes, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Nirmal ChackoDivision of Virology, ICAR-Indian Veterinary Research Institute (IVRI), Regional Campus, Mukteswar, Nainital District, Uttarakhand (UK), 263138, India.
Nihar Nalini MohantyDivision of Virology, ICAR-Indian Veterinary Research Institute (IVRI), Regional Campus, Mukteswar, Nainital District, Uttarakhand (UK), 263138, India.
Sanchay Kumar BiswasDivision of Virology, ICAR-Indian Veterinary Research Institute (IVRI), Regional Campus, Mukteswar, Nainital District, Uttarakhand (UK), 263138, India.
Karam ChandDivision of Virology, ICAR-Indian Veterinary Research Institute (IVRI), Regional Campus, Mukteswar, Nainital District, Uttarakhand (UK), 263138, India.
Revanaiah YogisharadhyaDivision of Virology, ICAR-Indian Veterinary Research Institute (IVRI), Regional Campus, Mukteswar, Nainital District, Uttarakhand (UK), 263138, India.
Awadh Bihari PandeyDivision of Virology, ICAR-Indian Veterinary Research Institute (IVRI), Regional Campus, Mukteswar, Nainital District, Uttarakhand (UK), 263138, India.
Bimalendu MondalICAR-Indian Veterinary Research Institute (IVRI), Eastern Regional Station, Kolkata, West Bengal (WB), 700037, India.
Sathish Bhadravati ShivachandraDivision of Virology, ICAR-Indian Veterinary Research Institute (IVRI), Regional Campus, Mukteswar, Nainital District, Uttarakhand (UK), 263138, India. sbshivachandra@gmail.com.
Indian Veterinary Research Institute · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bluetongue, an arthropod-borne non-contagious hemorrhagic disease of small ruminants, is caused by bluetongue virus (BTV). Several structural and non-structural proteins encoded by BTV have been associated with virulence mechanisms. In the present study, the NS3 protein sequences of bluetongue viral serotypes were analyzed for the presence of heptad regions and oligomer formation. Bioinformatic analysis of NS3 sequences of all 26 BTV serotypes revealed the presence of at least three coiled-coil motifs (CCMs). A conserved α-helical heptad sequence was identified at 14-26 aa (CCM-I), 185-198aa (CCM-II), and 94-116 aa (CCM-III). Among these, CCM-I occurs close to the N-terminus of NS3 and was presumed to be involved in oligomerization. Furthermore, the N-terminus of NS3 (1M-R117 aa) was over-expressed as a recombinant fusion protein in a prokaryotic expression system. Biochemical characterization of recombinant NS3Nt protein revealed that it forms SDS-resistant dimers and high-order oligomers (hexamer and/or octamer) under reducing or non-reducing conditions. Coiled-coil motifs are believed to be critical for NS protein oligomerization and have potential roles in the formation of viroporin ring/pore either with six/eight subunits and this is the first study toward characterization of CCMs in NS3 of bluetongue virus.

Indexed as

Protein MultimerizationBluetongue virusComputational BiologyElectrophoresis, Polyacrylamide GelProtein BindingProtein ConformationProtein Interaction Domains and MotifsSequence Analysis, DNAViral Nonstructural ProteinsS10 protein, Bluetongue virusViral Nonstructural ProteinsBluetongue virusCoiled-coil motifHeptadNon-structural protein 3OligomerRecombinant fusion protein

Identifiers

PMID26318174
OpenAlexW1156227598

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.